diff --git a/.cursor/worktrees.json b/.cursor/worktrees.json new file mode 100644 index 00000000..810d8c0d --- /dev/null +++ b/.cursor/worktrees.json @@ -0,0 +1,5 @@ +{ + "setup-worktree": [ + "make init" + ] +} diff --git a/.gitignore b/.gitignore index 90026803..041105cb 100644 --- a/.gitignore +++ b/.gitignore @@ -3,6 +3,7 @@ # ============================================================================ docs/_static/charts/*.html +docs/_static/js/plotly.min.js docs/api/autogen docs/api/public diff --git a/MANIFEST.in b/MANIFEST.in index 13c169dc..3706215c 100644 --- a/MANIFEST.in +++ b/MANIFEST.in @@ -21,10 +21,11 @@ include docs/Makefile include docs/make.bat include docs/robots.txt include docs/_static/favicon.ico +exclude docs/_static/js/plotly.min.js recursive-include docs *.md *.py *.rst recursive-include docs/_static/charts *.webp recursive-include docs/_static/css *.css -recursive-include docs/_static/img *.png *.webp *.svg *.gif *.jpg +recursive-include docs/_static/img *.png *.webp *.svg *.gif *.jpeg recursive-include docs/_static/js *.js recursive-include docs/_templates *.html prune docs/_build @@ -32,12 +33,13 @@ prune docs/api/autogen prune docs/api/public # Misc +recursive-include .cursor *.json recursive-include .github *.yml *.yaml recursive-include cicd_utils README.md *.py *.sh recursive-include misc *.py *.ipynb *.txt *.png recursive-include requirements *.txt recursive-include tests *.py -recursive-include tests/e2e/artifacts *.jpeg *.json +recursive-include tests/e2e/artifacts *.json # Globally excluded patterns recursive-exclude * *.py[cod] *.egg-info __pycache__ .ipynb_checkpoints/* diff --git a/Makefile b/Makefile index e13afd42..4f867ed6 100644 --- a/Makefile +++ b/Makefile @@ -96,6 +96,7 @@ clean-docs: ## remove documentation build artifacts @echo "==> Removing documentation build artifacts..." @rm -fr docs/_build/ docs/api/autogen/ docs/api/public/ @find . -wholename 'docs/_static/charts/*.html' -exec rm -fr {} + + @rm -f docs/_static/js/plotly.min.js .PHONY: clean-build diff --git a/README.md b/README.md index 48d7c991..0621cf27 100644 --- a/README.md +++ b/README.md @@ -46,13 +46,13 @@ The full official documentation can be found at: https://ridgeplot.readthedocs.i ### Basic example -For those in a hurry, here's a very basic example on how to quickly get started with [ridgeplot()](https://ridgeplot.readthedocs.io/en/stable/api/public/ridgeplot.ridgeplot.html) function. +For those in a hurry, here's a very basic example on how to quickly get started with the [ridgeplot()](https://ridgeplot.readthedocs.io/en/stable/api/public/ridgeplot.ridgeplot.html) function. ```python import numpy as np from ridgeplot import ridgeplot -my_samples = [np.random.normal(n / 1.2, size=600) for n in range(7, 0, -1)] +my_samples = [np.random.normal(n, size=900) for n in range(6, 0, -2)] fig = ridgeplot(samples=my_samples) fig.show() ``` diff --git a/cicd_utils/ridgeplot_examples/_base.py b/cicd_utils/ridgeplot_examples/_base.py index 1b57f514..dbb197e8 100644 --- a/cicd_utils/ridgeplot_examples/_base.py +++ b/cicd_utils/ridgeplot_examples/_base.py @@ -70,6 +70,13 @@ class Example: def __post_init__(self) -> None: self.fig = self.figure_factory() # pyright: ignore[reportUninitializedInstanceVariable] + + # Both `width` and `height` should be set in all example plots + if self.fig.layout.width != 800: + raise ValueError("All figures must have width 800") + if not isinstance(self.fig.layout.height, int): + raise ValueError("All figures must have an explicit height declared") # noqa: TRY004 + round_fig_data(self.fig, sig_figs=8) def to_json(self) -> str: @@ -86,8 +93,6 @@ def write_json(self, path: Path) -> None: def write_html(self, path: Path, minify_html: bool) -> None: fig = deepcopy(self.fig) - if fig.layout.height is None: - raise ValueError("The Figure's layout.height value must be explicitly set.") # Overriding the width to None results in a '100%' CSS width. # This is achieved by setting the `default_width` parameter # in `fig.to_html()` to "100%" (see below). @@ -140,6 +145,8 @@ def write_webp(self, path: Path) -> None: engine="kaleido", ) + # This method isn't used anywhere anymore but + # will be kept here for potential future use def write_jpeg(self, path: Path) -> None: fig = deepcopy(self.fig) fig = tighten_margins(fig, px=40) diff --git a/cicd_utils/ridgeplot_examples/_basic.py b/cicd_utils/ridgeplot_examples/_basic.py index 8192f1f6..cbac4b35 100644 --- a/cicd_utils/ridgeplot_examples/_basic.py +++ b/cicd_utils/ridgeplot_examples/_basic.py @@ -12,9 +12,9 @@ def main() -> go.Figure: from ridgeplot import ridgeplot rng = np.random.default_rng(42) - my_samples = [rng.normal(n / 1.2, size=600) for n in range(6, 0, -1)] + my_samples = [rng.normal(n, size=900) for n in range(6, 0, -2)] fig = ridgeplot(samples=my_samples) - fig.update_layout(height=350, width=800) + fig.update_layout(height=400, width=800) return fig diff --git a/cicd_utils/ridgeplot_examples/_basic_hist.py b/cicd_utils/ridgeplot_examples/_basic_hist.py index 71894542..2e013242 100644 --- a/cicd_utils/ridgeplot_examples/_basic_hist.py +++ b/cicd_utils/ridgeplot_examples/_basic_hist.py @@ -12,9 +12,9 @@ def main() -> go.Figure: from ridgeplot import ridgeplot rng = np.random.default_rng(42) - my_samples = [rng.normal(n / 1.2, size=600) for n in range(6, 0, -1)] - fig = ridgeplot(samples=my_samples, nbins=20) - fig.update_layout(height=350, width=800) + my_samples = [rng.normal(n, size=900) for n in range(6, 0, -2)] + fig = ridgeplot(samples=my_samples, nbins=18) + fig.update_layout(height=400, width=800) return fig diff --git a/docs/Makefile b/docs/Makefile index 9372db07..cb80d540 100644 --- a/docs/Makefile +++ b/docs/Makefile @@ -27,5 +27,5 @@ livehtml: --watch=../src/ridgeplot \ --re-ignore 'api/public/.*' \ --re-ignore '_static/charts/.*' \ - --re-ignore '_static/js/plotly.min.js' \ + --re-ignore '_static/js/plotly.*' \ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/_static/charts/basic.webp b/docs/_static/charts/basic.webp index 9581732e..c5ac82cf 100644 Binary files a/docs/_static/charts/basic.webp and b/docs/_static/charts/basic.webp differ diff --git a/docs/_static/charts/basic_hist.webp b/docs/_static/charts/basic_hist.webp index e83da636..a806215f 100644 Binary files a/docs/_static/charts/basic_hist.webp and b/docs/_static/charts/basic_hist.webp differ diff --git a/docs/_static/img/probly_original.jpg b/docs/_static/img/probly_original.jpeg similarity index 100% rename from docs/_static/img/probly_original.jpg rename to docs/_static/img/probly_original.jpeg diff --git a/docs/_templates/base.html b/docs/_templates/base.html index 65697bce..eac7cc50 100644 --- a/docs/_templates/base.html +++ b/docs/_templates/base.html @@ -10,6 +10,46 @@ the `extrahead` Sphinx block, which is placed at the bottom of the head section at the top of the page. #} - + {%- endblock extrahead %} -git diff --git a/docs/conf.py b/docs/conf.py index d525f428..8551486c 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -424,5 +424,5 @@ def wrapper(*args: Any, **kwargs: Any) -> None: def setup(app: Sphinx) -> None: - # app.connect("builder-inited", dispatch(write_plotlyjs_bundle), priority=501) + app.connect("builder-inited", dispatch(write_plotlyjs_bundle), priority=501) app.connect("builder-inited", dispatch(compile_all_plotly_charts), priority=502) diff --git a/docs/getting_started/getting_started.md b/docs/getting_started/getting_started.md index 020f4bb5..0997da46 100644 --- a/docs/getting_started/getting_started.md +++ b/docs/getting_started/getting_started.md @@ -10,7 +10,7 @@ This basic example shows how you can quickly get started with a simple call to t import numpy as np from ridgeplot import ridgeplot -my_samples = [np.random.normal(n / 1.2, size=600) for n in range(6, 0, -1)] +my_samples = [np.random.normal(n, size=900) for n in range(6, 0, -2)] fig = ridgeplot(samples=my_samples) fig.show() ``` @@ -97,7 +97,7 @@ The resulting ridgeline plot generated by the code above: ::: :::{tab-item} Target/reference image The target reference from the [_from Data to Viz_ post](https://www.data-to-viz.com/graph/ridgeline.html): -![reference ridgeline plot of the probly dataset from data to viz](/_static/img/probly_original.jpg) +![reference ridgeline plot of the probly dataset from data to viz](/_static/img/probly_original.jpeg) ::: :::: diff --git a/docs/index.md b/docs/index.md index e00a20a2..6fc01cd6 100644 --- a/docs/index.md +++ b/docs/index.md @@ -47,7 +47,7 @@ For those in a hurry, here's a very basic example on how to quickly get started import numpy as np from ridgeplot import ridgeplot -my_samples = [np.random.normal(n / 1.2, size=600) for n in range(6, 0, -1)] +my_samples = [np.random.normal(n, size=900) for n in range(6, 0, -2)] fig = ridgeplot(samples=my_samples) fig.show() ``` diff --git a/docs/reference/changelog.md b/docs/reference/changelog.md index 0706d93c..2d0024da 100644 --- a/docs/reference/changelog.md +++ b/docs/reference/changelog.md @@ -5,8 +5,22 @@ This document outlines the list of changes to ridgeplot between each release. Fo Unreleased changes ------------------ -## CI/CD +### Bug fixes + +- Fix the way histogram bin centers are computed ({gh-pr}`364`) + +### Documentation + +- Update the basic examples throughout the docs ({gh-pr}`364`) +- Bundle a local copy of `plotly.min.js` as a CDN fallback ({gh-pr}`364`) + +### Developer Experience + +- Add a basic version of Cursor's `worktrees.json` config ({gh-pr}`364`) + +### CI/CD +- Remove the JPEGs used for visual inspection in regression tests ({gh-pr}`364`) - Upgrade ruff's target Python version to 3.10 ({gh-pr}`363`) - Bump sigstore/gh-action-sigstore-python from 3.1.0 to 3.2.0 ({gh-pr}`359`) - Bump actions/download-artifact from 5 to 6 ({gh-pr}`354`) diff --git a/src/ridgeplot/__init__.py b/src/ridgeplot/__init__.py index 84682ffc..d601cb50 100644 --- a/src/ridgeplot/__init__.py +++ b/src/ridgeplot/__init__.py @@ -1,26 +1,22 @@ """ridgeplot: beautiful ridgeline plots in Python -The ridgeplot python library aims at providing a simple API for plotting -beautiful ridgeline plots within the extensive Plotly interactive graphing -environment. +ridgeplot is a Python package that provides a simple interface for plotting +beautiful and interactive ridgeline plots within the extensive Plotly ecosystem. +Take a look at the getting started guide, which provides a quick introduction +to the ridgeplot library: https://ridgeplot.readthedocs.io/en/stable/getting_started/getting_started.html - Simple example: +The full official documentation can be found at: https://ridgeplot.readthedocs.io/en/stable/ - from numpy.random import normal - from ridgeplot import ridgeplot +For those in a hurry, here's a very basic example on how to quickly get started +with the `ridgeplot()` function. - # Put your real samples here... - synthetic_samples = [normal(n / 1.2, size=600) for n in reversed(range(9))] + import numpy as np + from ridgeplot import ridgeplot - # The `ridgeplot()` helper comes packed with sensible defaults - fig = ridgeplot(samples=synthetic_samples) - - # and the returned Plotly figure is still fully customizable - fig.update_layout(height=500, width=800) - - # show us the work!! - fig.show() + my_samples = [np.random.normal(n, size=900) for n in range(6, 0, -2)] + fig = ridgeplot(samples=my_samples) + fig.show() """ diff --git a/src/ridgeplot/_hist.py b/src/ridgeplot/_hist.py index ef085d87..4f932ba7 100644 --- a/src/ridgeplot/_hist.py +++ b/src/ridgeplot/_hist.py @@ -34,8 +34,9 @@ def bin_trace_samples( raise ValueError("The weights array should have the same length as the samples array.") if not np.isfinite(weights).all(): raise ValueError("The weights array should not contain any infs or NaNs.") - hist, bins = np.histogram(trace_samples, bins=nbins, weights=weights) - return [(float(x), float(y)) for x, y in zip(bins, hist, strict=True)] + hist_counts, hist_edges = np.histogram(trace_samples, bins=nbins, weights=weights) + bin_centers = 0.5 * (hist_edges[:-1] + hist_edges[1:]) + return [(float(x), float(y)) for x, y in zip(bin_centers, hist_counts, strict=True)] def bin_samples( diff --git a/tests/e2e/artifacts/basic.jpeg b/tests/e2e/artifacts/basic.jpeg deleted file mode 100644 index 42b90ebf..00000000 Binary files a/tests/e2e/artifacts/basic.jpeg and /dev/null differ diff --git a/tests/e2e/artifacts/basic.json b/tests/e2e/artifacts/basic.json index 9a6a0893..73eaf851 100644 --- a/tests/e2e/artifacts/basic.json +++ b/tests/e2e/artifacts/basic.json @@ -1 +1 @@ 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a/tests/e2e/test_examples.py +++ b/tests/e2e/test_examples.py @@ -18,13 +18,6 @@ def test_paths_exist() -> None: assert PATH_CHARTS.is_dir() -@pytest.mark.parametrize("example", ALL_EXAMPLES, ids=lambda e: e.plot_id) -def test_examples_width_height_set(example: Example) -> None: - msg = "Both `width` and `height` should be set in all example plots." - assert isinstance(example.fig.layout.width, int), msg - assert isinstance(example.fig.layout.height, int), msg - - @pytest.mark.parametrize("example", ALL_EXAMPLES, ids=lambda e: e.plot_id) def test_json_regressions(example: Example) -> None: expected = (PATH_ARTIFACTS / f"{example.plot_id}.json").read_text() @@ -46,10 +39,6 @@ def _update_all_artifacts() -> None: print(f"Updating artifacts for: {example.plot_id!r}") # noqa: T201 # Save JSONs for regression tests example.write_json(PATH_ARTIFACTS) - # We also save JPEGs for visual inspection (e.g., in PRs) - # (Don't use JPEGs for regression tests because outputs - # will vary between Plotly versions and platforms) - example.write_jpeg(PATH_ARTIFACTS) # Just to keep things in sync with the docs, we should also # regenerate the WebP images used there. These are tracked # by Git because some are used in the README (which needs diff --git a/tests/unit/test_hist.py b/tests/unit/test_hist.py index 9874eca0..0008bbbe 100644 --- a/tests/unit/test_hist.py +++ b/tests/unit/test_hist.py @@ -12,7 +12,11 @@ SAMPLES_IN = [1, 2, 2, 3, 4] NBINS = 4 -DENSITIES_OUT = [(1.0, 1.0), (1.75, 2.0), (2.5, 1.0), (3.25, 1.0)] +# NOTE: The x values in DENSITIES_OUT correspond to the centers of +# equally spaced bins over the range [1, 4]. +# This can be counterintuitive for count data, as the bins +# do not align with the integer sample values. +DENSITIES_OUT = [(1.375, 1), (2.125, 2), (2.875, 1), (3.625, 1)] X_OUT, Y_OUT = zip(*DENSITIES_OUT, strict=True) WEIGHTS = [1, 1, 1, 1, 9]