dependencies.Rmd

---
title: "dependencies"
author: "Jelena Chuklina"
date: "1/30/2020"
output: html_document
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

## Dependencies in the project:
For Aging Mice data
```{r R3.6}
install.packages(c('dplyr','readr','tidyr','stringi','reshape2', 'ggplot2', 
                   'ggpubr', 'png'))
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("proBatch")
```

For R 3.4 (InterLab and PanCancer data)
```{r R3.4}
install.packages(c('aLFQ','dplyr','readr','tidyr','stringi','reshape2','devtools',
                   'ggplot2', 'ggpubr','ggdendextend'))
devtools::install_github('symbioticMe/proBatch3.4')
source("https://bioconductor.org/biocLite.R")
BiocInstaller::biocLite("MSstats")
```


#Bioconductor packages:
1. proBatch