From 89c27fe92673da0efa2202bfcd32ff4aa8f4ebbb Mon Sep 17 00:00:00 2001 From: Bhargav Dabhade Date: Thu, 29 Jan 2026 22:32:06 +0000 Subject: [PATCH 1/2] feat: add stats/base/dists/bradford/logpdf Signed-off-by: Bhargav Dabhade --- type: pre_commit_static_analysis_report description: Results of running static analysis checks when committing changes. report: - task: lint_filenames status: passed - task: lint_editorconfig status: passed - task: lint_markdown status: passed - task: lint_package_json status: passed - task: lint_repl_help status: passed - task: lint_javascript_src status: passed - task: lint_javascript_cli status: na - task: lint_javascript_examples status: passed - task: lint_javascript_tests status: passed - task: lint_javascript_benchmarks status: passed - task: lint_python status: missing_dependencies - task: lint_r status: na - task: lint_c_src status: missing_dependencies - task: lint_c_examples status: missing_dependencies - task: lint_c_benchmarks status: missing_dependencies - task: lint_c_tests_fixtures status: na - task: lint_shell status: na - task: lint_typescript_declarations status: passed - task: lint_typescript_tests status: passed - task: lint_license_headers status: passed --- --- .../base/dists/bradford/logpdf/README.md | 245 ++++++++++++++++++ .../bradford/logpdf/benchmark/benchmark.js | 88 +++++++ .../logpdf/benchmark/benchmark.native.js | 68 +++++ .../bradford/logpdf/benchmark/c/Makefile | 146 +++++++++++ .../bradford/logpdf/benchmark/c/benchmark.c | 140 ++++++++++ .../base/dists/bradford/logpdf/binding.gyp | 170 ++++++++++++ .../logpdf/docs/img/equation_bradford_pdf.svg | 50 ++++ .../base/dists/bradford/logpdf/docs/repl.txt | 74 ++++++ .../bradford/logpdf/docs/types/index.d.ts | 125 +++++++++ .../dists/bradford/logpdf/docs/types/test.ts | 98 +++++++ .../dists/bradford/logpdf/examples/c/Makefile | 146 +++++++++++ .../bradford/logpdf/examples/c/example.c | 40 +++ .../dists/bradford/logpdf/examples/index.js | 31 +++ .../base/dists/bradford/logpdf/include.gypi | 53 ++++ .../stdlib/stats/base/dists/bradford/logpdf.h | 40 +++ .../base/dists/bradford/logpdf/lib/factory.js | 79 ++++++ .../base/dists/bradford/logpdf/lib/index.js | 54 ++++ .../base/dists/bradford/logpdf/lib/main.js | 89 +++++++ .../base/dists/bradford/logpdf/lib/native.js | 79 ++++++ .../base/dists/bradford/logpdf/manifest.json | 86 ++++++ .../base/dists/bradford/logpdf/package.json | 69 +++++ .../base/dists/bradford/logpdf/src/Makefile | 70 +++++ .../base/dists/bradford/logpdf/src/addon.c | 22 ++ .../base/dists/bradford/logpdf/src/main.c | 46 ++++ .../test/fixtures/python/large_c_log.json | 1 + .../test/fixtures/python/medium_c_log.json | 1 + .../logpdf/test/fixtures/python/runner.py | 85 ++++++ .../test/fixtures/python/small_c_log.json | 1 + .../bradford/logpdf/test/test.factory.js | 187 +++++++++++++ .../base/dists/bradford/logpdf/test/test.js | 38 +++ .../dists/bradford/logpdf/test/test.logpdf.js | 165 ++++++++++++ .../dists/bradford/logpdf/test/test.native.js | 180 +++++++++++++ 32 files changed, 2766 insertions(+) create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/README.md create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.native.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/c/Makefile create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/c/benchmark.c create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/binding.gyp create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/img/equation_bradford_pdf.svg create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/repl.txt create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/types/index.d.ts create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/types/test.ts create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/c/Makefile create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/c/example.c create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/index.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/include.gypi create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/include/stdlib/stats/base/dists/bradford/logpdf.h create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/factory.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/index.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/main.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/native.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/manifest.json create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/package.json create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/Makefile create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/addon.c create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/main.c create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/large_c_log.json create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/medium_c_log.json create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/runner.py create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/small_c_log.json create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.factory.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.logpdf.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.native.js diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/README.md b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/README.md new file mode 100644 index 000000000000..7afe0c8b309c --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/README.md @@ -0,0 +1,245 @@ + + +# Logarithm of Probability Density Function + +> [Bradford][bradford-distribution] distribution logarithm of the [probability density function][pdf] (logPDF). + +
+ +The logarithm of the [probability density function][pdf] (logPDF) for a [Bradford][bradford-distribution] random variable is + + + +```math +\ln f(x;c) = \ln(c) - \ln(1+cx) - \ln(\ln(1+c)) +``` + + + + + +where `c > 0` is the shape parameter of the distribution. + +
+ + + +
+ +## Usage + +```javascript +var logpdf = require( '@stdlib/stats/base/dists/bradford/logpdf' ); +``` + +#### logpdf( x, c ) + +Evaluates the logarithm of [probability density function][pdf] (PDF) for a [Bradford][bradford-distribution] distribution with shape parameter `c` at a value `x`. + +```javascript +var y = logpdf( 0.1, 0.1 ); +// returns ~0.038 + +y = logpdf( 0.5, 5.0 ); +// returns ~-0.227 + +y = logpdf( 1.0, 10.0 ); +// returns ~-0.970 +``` + +If provided `NaN` as any argument, the function returns `NaN`. + +```javascript +var y = logpdf( NaN, 1.0 ); +// returns NaN + +y = logpdf( 0.0, NaN ); +// returns NaN +``` + +If provided an `x` value which is outside the support `[0,1]`, the function returns `-Infinity`. + +```javascript +var y = logpdf( 2.0, 1.0 ); +// returns -Infinity + +y = logpdf( -0.5, 1.0 ); +// returns -Infinity +``` + +If provided a shape parameter `c <= 0`, the function returns `NaN`. + +```javascript +var y = logpdf( 0.5, 0.0 ); +// returns NaN + +y = logpdf( 0.5, -5.0 ); +// returns NaN +``` + +#### logpdf.factory( c ) + +Returns a function for evaluating the logarithm of a [PDF][pdf] for a [Bradford][bradford-distribution] distribution with shape parameter `c`. + +```javascript +var myLogPDF = logpdf.factory( 5.0 ); +var y = myLogPDF( 0.5 ); +// returns ~-0.227 + +y = myLogPDF( 1.0 ); +// returns ~-0.766 +``` + +
+ + + +
+ +## Examples + + + +```javascript +var uniform = require( '@stdlib/random/array/uniform' ); +var logEachMap = require( '@stdlib/console/log-each-map' ); +var logpdf = require( '@stdlib/stats/base/dists/bradford/logpdf' ); + +var opts = { + 'dtype': 'float64' +}; +var c = uniform( 10, 0.1, 10.0, opts ); +var x = uniform( 10, 0.0, 1.0, opts ); + +logEachMap( 'x: %0.4f, c: %0.4f, ln(f(x;c)): %0.4f', x, c, logpdf ); +``` + +
+ + + + + +
+ +## C APIs + +
+ +
+ + + +
+ +### Usage + +```c +#include "stdlib/stats/base/dists/bradford/logpdf.h" +``` + +#### stdlib_base_dists_bradford_logpdf( x, c ) + +Evaluates the logarithm of the probability density function for a Bradford distribution. + +```c +double out = stdlib_base_dists_bradford_logpdf( 0.5, 5.0 ); +// returns ~-0.227 +``` + +The function accepts the following arguments: + +- **x**: `[in] double` input value. +- **c**: `[in] double` shape parameter. + +```c +double stdlib_base_dists_bradford_logpdf( const double x, const double c ); +``` + +
+ + + +
+ +
+ + + +
+ +### Examples + +```c +#include "stdlib/stats/base/dists/bradford/logpdf.h" +#include +#include + +static double random_uniform( const double min, const double max ) { + double v = (double)rand() / ( (double)RAND_MAX + 1.0 ); + return min + ( v*(max-min) ); +} + +int main( void ) { + double x; + double c; + double y; + int i; + + for ( i = 0; i < 10; i++ ) { + x = random_uniform( 0.0, 1.0 ); + c = random_uniform( 0.01, 10.0 ); + y = stdlib_base_dists_bradford_logpdf( x, c ); + printf( "x: %lf, c: %lf, ln(f(x;c)): %lf\n", x, c, y ); + } +} +``` + +
+ + + +
+ + + + + +
+ +
+ + + + + +
+ +[pdf]: https://en.wikipedia.org/wiki/Probability_density_function + +[bradford-distribution]: https://en.wikipedia.org/wiki/Bradford%27s_law + +
+ + diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.js new file mode 100644 index 000000000000..f2222072791a --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.js @@ -0,0 +1,88 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var bench = require( '@stdlib/bench' ); +var uniform = require( '@stdlib/random/array/uniform' ); +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var format = require( '@stdlib/string/format' ); +var pkg = require( './../package.json' ).name; +var logpdf = require( './../lib' ); + + +// MAIN // + +bench( pkg, function benchmark( b ) { + var opts; + var x; + var c; + var y; + var i; + + opts = { + 'dtype': 'float64' + }; + x = uniform( 100, 0.0, 1.0, opts ); + c = uniform( 100, 0.1, 10.0, opts ); + + b.tic(); + for ( i = 0; i < b.iterations; i++ ) { + y = logpdf( x[ i % x.length ], c[ i % c.length ] ); + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + } + b.toc(); + + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + b.pass( 'benchmark finished' ); + b.end(); +}); + +bench( format( '%s:factory', pkg ), function benchmark( b ) { + var mylogpdf; + var opts; + var x; + var y; + var i; + + opts = { + 'dtype': 'float64' + }; + x = uniform( 100, 0.0, 1.0, opts ); + mylogpdf = logpdf.factory( 5.0 ); + + b.tic(); + for ( i = 0; i < b.iterations; i++ ) { + y = mylogpdf( x[ i % x.length ] ); + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + } + b.toc(); + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + b.pass( 'benchmark finished' ); + b.end(); +}); diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.native.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.native.js new file mode 100644 index 000000000000..27e49fb163bf --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.native.js @@ -0,0 +1,68 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2025 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var resolve = require( 'path' ).resolve; +var bench = require( '@stdlib/bench' ); +var uniform = require( '@stdlib/random/array/uniform' ); +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var tryRequire = require( '@stdlib/utils/try-require' ); +var format = require( '@stdlib/string/format' ); +var pkg = require( './../package.json' ).name; + + +// VARIABLES // + +var logpdf = tryRequire( resolve( __dirname, './../lib/native.js' ) ); +var opts = { + 'skip': ( logpdf instanceof Error ) +}; + + +// MAIN // + +bench( format( '%s::native', pkg ), opts, function benchmark( b ) { + var opts; + var x; + var c; + var y; + var i; + + opts = { + 'dtype': 'float64' + }; + x = uniform( 100, 0.0, 1.0, opts ); + c = uniform( 100, 0.1, 10.0, opts ); + + b.tic(); + for ( i = 0; i < b.iterations; i++ ) { + y = logpdf( x[ i % x.length ], c[ i % c.length ] ); + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + } + b.toc(); + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + b.pass( 'benchmark finished' ); + b.end(); +}); diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/c/Makefile b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/c/Makefile new file mode 100644 index 000000000000..979768abbcec --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/c/Makefile @@ -0,0 +1,146 @@ +#/ +# @license Apache-2.0 +# +# Copyright (c) 2026 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +#/ + +# VARIABLES # + +ifndef VERBOSE + QUIET := @ +else + QUIET := +endif + +# Determine the OS ([1][1], [2][2]). +# +# [1]: https://en.wikipedia.org/wiki/Uname#Examples +# [2]: http://stackoverflow.com/a/27776822/2225624 +OS ?= $(shell uname) +ifneq (, $(findstring MINGW,$(OS))) + OS := WINNT +else +ifneq (, $(findstring MSYS,$(OS))) + OS := WINNT +else +ifneq (, $(findstring CYGWIN,$(OS))) + OS := WINNT +else +ifneq (, $(findstring Windows_NT,$(OS))) + OS := WINNT +endif +endif +endif +endif + +# Define the program used for compiling C source files: +ifdef C_COMPILER + CC := $(C_COMPILER) +else + CC := gcc +endif + +# Define the command-line options when compiling C files: +CFLAGS ?= \ + -std=c99 \ + -O3 \ + -Wall \ + -pedantic + +# Determine whether to generate position independent code ([1][1], [2][2]). +# +# [1]: https://gcc.gnu.org/onlinedocs/gcc/Code-Gen-Options.html#Code-Gen-Options +# [2]: http://stackoverflow.com/questions/5311515/gcc-fpic-option +ifeq ($(OS), WINNT) + fPIC ?= +else + fPIC ?= -fPIC +endif + +# List of includes (e.g., `-I /foo/bar -I /beep/boop/include`): +INCLUDE ?= + +# List of source files: +SOURCE_FILES ?= + +# List of libraries (e.g., `-lopenblas -lpthread`): +LIBRARIES ?= + +# List of library paths (e.g., `-L /foo/bar -L /beep/boop`): +LIBPATH ?= + +# List of C targets: +c_targets := benchmark.out + + +# RULES # + +#/ +# Compiles source files. +# +# @param {string} [C_COMPILER] - C compiler (e.g., `gcc`) +# @param {string} [CFLAGS] - C compiler options +# @param {(string|void)} [fPIC] - compiler flag determining whether to generate position independent code (e.g., `-fPIC`) +# @param {string} [INCLUDE] - list of includes (e.g., `-I /foo/bar -I /beep/boop/include`) +# @param {string} [SOURCE_FILES] - list of source files +# @param {string} [LIBPATH] - list of library paths (e.g., `-L /foo/bar -L /beep/boop`) +# @param {string} [LIBRARIES] - list of libraries (e.g., `-lopenblas -lpthread`) +# +# @example +# make +# +# @example +# make all +#/ +all: $(c_targets) + +.PHONY: all + +#/ +# Compiles C source files. +# +# @private +# @param {string} CC - C compiler (e.g., `gcc`) +# @param {string} CFLAGS - C compiler options +# @param {(string|void)} fPIC - compiler flag determining whether to generate position independent code (e.g., `-fPIC`) +# @param {string} INCLUDE - list of includes (e.g., `-I /foo/bar`) +# @param {string} SOURCE_FILES - list of source files +# @param {string} LIBPATH - list of library paths (e.g., `-L /foo/bar`) +# @param {string} LIBRARIES - list of libraries (e.g., `-lopenblas`) +#/ +$(c_targets): %.out: %.c + $(QUIET) $(CC) $(CFLAGS) $(fPIC) $(INCLUDE) -o $@ $(SOURCE_FILES) $< $(LIBPATH) -lm $(LIBRARIES) + +#/ +# Runs compiled benchmarks. +# +# @example +# make run +#/ +run: $(c_targets) + $(QUIET) ./$< + +.PHONY: run + +#/ +# Removes generated files. +# +# @example +# make clean +#/ +clean: + $(QUIET) -rm -f *.o *.out + +.PHONY: clean diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/c/benchmark.c b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/c/benchmark.c new file mode 100644 index 000000000000..aa17981a59cf --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/c/benchmark.c @@ -0,0 +1,140 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +#include "stdlib/stats/base/dists/bradford/logpdf.h" +#include "stdlib/constants/float64/eps.h" +#include +#include +#include +#include +#include + +#define NAME "bradford-logpdf" +#define ITERATIONS 1000000 +#define REPEATS 3 + +/** +* Prints the TAP version. +*/ +static void print_version( void ) { + printf( "TAP version 13\n" ); +} + +/** +* Prints the TAP summary. +* +* @param total total number of tests +* @param passing total number of passing tests +*/ +static void print_summary( int total, int passing ) { + printf( "#\n" ); + printf( "1..%d\n", total ); // TAP plan + printf( "# total %d\n", total ); + printf( "# pass %d\n", passing ); + printf( "#\n" ); + printf( "# ok\n" ); +} + +/** +* Prints benchmark results. +* +* @param elapsed elapsed time in seconds +*/ +static void print_results( double elapsed ) { + double rate = ( (double)ITERATIONS ) / elapsed; + printf( " ---\n" ); + printf( " iterations: %d\n", ITERATIONS ); + printf( " elapsed: %0.9f\n", elapsed ); + printf( " rate: %0.9f\n", rate ); + printf( " ...\n" ); +} + +/** +* Returns a clock time. +* +* @return clock time +*/ +static double tic( void ) { + struct timeval now; + gettimeofday( &now, NULL ); + return (double)now.tv_sec + (double)now.tv_usec/1.0e6; +} + +/** +* Generates a pseudorandom number drawn from a uniform distribution. +* +* @param a lower bound (inclusive) +* @param b upper bound (exclusive) +* @return pseudorandom number +*/ +static double random_uniform( const double a, const double b ) { + double r = (double)rand() / ( (double)RAND_MAX + 1.0 ); + return a + (r * (b-a)); +} + +/** +* Runs a benchmark. +* +* @return elapsed time in seconds +*/ +static double benchmark( void ) { + double elapsed; + double x[ 100 ]; + double c[ 100 ]; + double t; + double y; + int i; + + for ( i = 0; i < 100; i++ ) { + x[ i ] = random_uniform( 0.0, 1.0 ); + c[ i ] = random_uniform( STDLIB_CONSTANT_FLOAT64_EPS, 10.0 ); + } + t = tic(); + for ( i = 0; i < ITERATIONS; i++ ) { + y = stdlib_base_dists_bradford_logpdf( x[ i % 100 ], c[ i % 100 ] ); + if ( y != y ) { + printf( "should not return NaN\n" ); + break; + } + } + elapsed = tic() - t; + if ( y != y ) { + printf( "should not return NaN\n" ); + } + return elapsed; +} + +/** +* Main execution sequence. +*/ +int main( void ) { + double elapsed; + int i; + + // Use the current time to seed the pseudorandom number generator: + srand( time( NULL ) ); + + print_version(); + for ( i = 0; i < REPEATS; i++ ) { + printf( "# c::%s\n", NAME ); + elapsed = benchmark(); + print_results( elapsed ); + printf( "ok %d benchmark finished\n", i+1 ); + } + print_summary( REPEATS, REPEATS ); +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/binding.gyp b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/binding.gyp new file mode 100644 index 000000000000..68a1ca11d160 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/binding.gyp @@ -0,0 +1,170 @@ +# @license Apache-2.0 +# +# Copyright (c) 2025 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +# A `.gyp` file for building a Node.js native add-on. +# +# [1]: https://gyp.gsrc.io/docs/InputFormatReference.md +# [2]: https://gyp.gsrc.io/docs/UserDocumentation.md +{ + # List of files to include in this file: + 'includes': [ + './include.gypi', + ], + + # Define variables to be used throughout the configuration for all targets: + 'variables': { + # Target name should match the add-on export name: + 'addon_target_name%': 'addon', + + # Set variables based on the host OS: + 'conditions': [ + [ + 'OS=="win"', + { + # Define the object file suffix: + 'obj': 'obj', + }, + { + # Define the object file suffix: + 'obj': 'o', + } + ], # end condition (OS=="win") + ], # end conditions + }, # end variables + + # Define compile targets: + 'targets': [ + + # Target to generate an add-on: + { + # The target name should match the add-on export name: + 'target_name': '<(addon_target_name)', + + # Define dependencies: + 'dependencies': [], + + # Define directories which contain relevant include headers: + 'include_dirs': [ + # Local include directory: + '<@(include_dirs)', + ], + + # List of source files: + 'sources': [ + '<@(src_files)', + ], + + # Settings which should be applied when a target's object files are used as linker input: + 'link_settings': { + # Define libraries: + 'libraries': [ + '<@(libraries)', + ], + + # Define library directories: + 'library_dirs': [ + '<@(library_dirs)', + ], + }, + + # C/C++ compiler flags: + 'cflags': [ + # Enable commonly used warning options: + '-Wall', + + # Aggressive optimization: + '-O3', + ], + + # C specific compiler flags: + 'cflags_c': [ + # Specify the C standard to which a program is expected to conform: + '-std=c99', + ], + + # C++ specific compiler flags: + 'cflags_cpp': [ + # Specify the C++ standard to which a program is expected to conform: + '-std=c++11', + ], + + # Linker flags: + 'ldflags': [], + + # Apply conditions based on the host OS: + 'conditions': [ + [ + 'OS=="mac"', + { + # Linker flags: + 'ldflags': [ + '-undefined dynamic_lookup', + '-Wl,-no-pie', + '-Wl,-search_paths_first', + ], + }, + ], # end condition (OS=="mac") + [ + 'OS!="win"', + { + # C/C++ flags: + 'cflags': [ + # Generate platform-independent code: + '-fPIC', + ], + }, + ], # end condition (OS!="win") + ], # end conditions + }, # end target <(addon_target_name) + + # Target to copy a generated add-on to a standard location: + { + 'target_name': 'copy_addon', + + # Declare that the output of this target is not linked: + 'type': 'none', + + # Define dependencies: + 'dependencies': [ + # Require that the add-on be generated before building this target: + '<(addon_target_name)', + ], + + # Define a list of actions: + 'actions': [ + { + 'action_name': 'copy_addon', + 'message': 'Copying addon...', + + # Explicitly list the inputs in the command-line invocation below: + 'inputs': [], + + # Declare the expected outputs: + 'outputs': [ + '<(addon_output_dir)/<(addon_target_name).node', + ], + + # Define the command-line invocation: + 'action': [ + 'cp', + '<(PRODUCT_DIR)/<(addon_target_name).node', + '<(addon_output_dir)/<(addon_target_name).node', + ], + }, + ], # end actions + }, # end target copy_addon + ], # end targets +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/img/equation_bradford_pdf.svg b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/img/equation_bradford_pdf.svg new file mode 100644 index 000000000000..4edb9d339608 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/img/equation_bradford_pdf.svg @@ -0,0 +1,50 @@ + +f left-parenthesis x semicolon c right-parenthesis equals StartFraction c Over left-parenthesis ln left-parenthesis 1 plus c right-parenthesis right-parenthesis left-parenthesis 1 plus c x right-parenthesis EndFraction + + + \ No newline at end of file diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/repl.txt b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/repl.txt new file mode 100644 index 000000000000..dd5225d13a13 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/repl.txt @@ -0,0 +1,74 @@ + +{{alias}}( x, c ) + Evaluates the logarithm of the probability density + function (logPDF) for a Bradford distribution + with shape parameter `c` at a value `x`. + + If provided `NaN` as any argument, the function returns `NaN`. + + If provided `c <= 0`, the function returns `NaN`. + + If `x` is outside the interval [0,1], the function returns `-Infinity`. + + Parameters + ---------- + x: number + Input value. + + c: number + Shape parameter. + + Returns + ------- + out: number + Evaluated logPDF. + + Examples + -------- + > var y = {{alias}}( 0.1, 0.1 ) + ~0.038 + > y = {{alias}}( 0.5, 5.0 ) + ~-0.227 + > y = {{alias}}( 1.0, 10.0 ) + ~-0.970 + > y = {{alias}}( 2.0, 0.5 ) + -Infinity + > y = {{alias}}( -1.0, 0.5 ) + -Infinity + + > y = {{alias}}( 0.5, 0.0 ) + NaN + > y = {{alias}}( 0.5, -5.0 ) + NaN + + > y = {{alias}}( NaN, 1.0 ) + NaN + > y = {{alias}}( 1.0, NaN ) + NaN + + +{{alias}}.factory( c ) + Returns a function for evaluating the natural logarithm + of the probability density function (logPDF) of a Bradford + distribution with shape parameter `c`. + + Parameters + ---------- + c: number + Shape parameter. + + Returns + ------- + logpdf: Function + Logarithm of the probability density function (logPDF). + + Examples + -------- + > var myLogPDF = {{alias}}.factory( 5.0 ); + > var y = myLogPDF( 0.5 ) + ~-0.227 + > y = myLogPDF( 1.0 ) + ~-0.766 + + See Also + -------- diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/types/index.d.ts b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/types/index.d.ts new file mode 100644 index 000000000000..d63770ddaaa2 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/types/index.d.ts @@ -0,0 +1,125 @@ +/* +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +// TypeScript Version: 4.1 + +/** +* Evaluates the natural logarithm of the probability density function (logPDF) +* for a Bradford distribution. +* +* @param x - input value +* @returns evaluated logPDF +*/ +type Unary = ( x: number ) => number; + + +/** +* Interface for the logarithm of the probability density function (logPDF) of a Bradford distribution. +*/ +interface LogPDF { + /** + * Evaluates the natural logarithm of the probability density function (logPDF) for a Bradford distribution with shape parameter `c` at a value `x`. + * + * ## Notes + * + * - If provided `c <= 0`, the function returns `NaN`. + * - If `x` is outside the interval [0,1], the function returns `-Infinity`. + * + * @param x - input value + * @param c - shape parameter + * @returns evaluated logPDF + * + * @example + * var v = logpdf( 0.1, 0.1 ); + * // returns ~0.038 + * + * @example + * var v = logpdf( 0.5, 5.0 ); + * // returns ~-0.227 + * + * @example + * var v = logpdf( 1.0, 10.0 ); + * // returns ~-0.970 + * + * @example + * var y = logpdf( 2.0, 0.5 ); + * // returns -Infinity + * + * @example + * var y = logpdf( -1.0, 0.5 ); + * // returns -Infinity + * + * @example + * var y = logpdf( 0.5, 0.0 ); + * // returns NaN + * + * @example + * var y = logpdf( 0.5, -5.0 ); + * // returns NaN + * + * @example + * var y = logpdf( NaN, 1.0 ); + * // returns NaN + * + * @example + * var y = logpdf( 1.0, NaN ); + * // returns NaN + */ + ( x: number, c: number ): number; + + /** + * Returns a function for evaluating the natural logarithm of the probability density function (logPDF) for a Bradford distribution with shape parameter `c`. + * + * @param c - shape parameter + * @returns logPDF + * + * @example + * var mylogpdf = logpdf.factory( 5.0 ); + * var y = mylogpdf( 0.5 ); + * // returns ~-0.227 + * + * y = mylogpdf( 1.0 ); + * // returns ~-0.766 + */ + factory( c: number ): Unary; +} + +/** +* Bradford distribution logarithm of the probability density function (logPDF). +* +* @param x - input value +* @param c - shape parameter +* @returns evaluated logPDF +* +* @example +* var y = logpdf( 0.5, 5.0 ); +* // returns ~-0.227 +* +* var mylogpdf = logpdf.factory( 5.0 ); +* y = mylogpdf( 0.5 ); +* // returns ~-0.227 +* +* y = mylogpdf( 1.0 ); +* // returns ~-0.766 +*/ +declare var logpdf: LogPDF; + + +// EXPORTS // + +export = logpdf; diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/types/test.ts b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/types/test.ts new file mode 100644 index 000000000000..efa43adee698 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/docs/types/test.ts @@ -0,0 +1,98 @@ +/* +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +import logpdf = require( './index' ); + + +// TESTS // + +// The function returns a number... +{ + logpdf( 0, 1 ); // $ExpectType number + logpdf( 1, 5 ); // $ExpectType number +} + +// The compiler throws an error if the function is provided values other than two numbers... +{ + logpdf( true, 3 ); // $ExpectError + logpdf( false, 2 ); // $ExpectError + logpdf( '5', 1 ); // $ExpectError + logpdf( [], 1 ); // $ExpectError + logpdf( {}, 2 ); // $ExpectError + logpdf( ( x: number ): number => x, 2 ); // $ExpectError + + logpdf( 9, true ); // $ExpectError + logpdf( 9, false ); // $ExpectError + logpdf( 5, '5' ); // $ExpectError + logpdf( 8, [] ); // $ExpectError + logpdf( 9, {} ); // $ExpectError + logpdf( 8, ( x: number ): number => x ); // $ExpectError +} + +// The compiler throws an error if the function is provided an unsupported number of arguments... +{ + logpdf(); // $ExpectError + logpdf( 1 ); // $ExpectError + logpdf( 1, 5, 3 ); // $ExpectError +} + +// Attached to main export is a `factory` method which returns a function... +{ + logpdf.factory( 5 ); // $ExpectType Unary +} + +// The `factory` method returns a function which returns a number... +{ + const fcn = logpdf.factory( 5 ); + fcn( 1 ); // $ExpectType number +} + +// The compiler throws an error if the function returned by the `factory` method is provided invalid arguments... +{ + const fcn = logpdf.factory( 5 ); + fcn( true ); // $ExpectError + fcn( false ); // $ExpectError + fcn( '5' ); // $ExpectError + fcn( [] ); // $ExpectError + fcn( {} ); // $ExpectError + fcn( ( x: number ): number => x ); // $ExpectError +} + +// The compiler throws an error if the function returned by the `factory` method is provided an unsupported number of arguments... +{ + const fcn = logpdf.factory( 5 ); + fcn(); // $ExpectError + fcn( 2, 0 ); // $ExpectError + fcn( 2, 0, 1 ); // $ExpectError +} + +// The compiler throws an error if the `factory` method is provided values other than one number... +{ + logpdf.factory( true ); // $ExpectError + logpdf.factory( false ); // $ExpectError + logpdf.factory( '5' ); // $ExpectError + logpdf.factory( [] ); // $ExpectError + logpdf.factory( {} ); // $ExpectError + logpdf.factory( ( x: number ): number => x ); // $ExpectError +} + +// The compiler throws an error if the `factory` method is provided an unsupported number of arguments... +{ + logpdf.factory( 0, 1 ); // $ExpectError + logpdf.factory( 0, 4, 8 ); // $ExpectError +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/c/Makefile b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/c/Makefile new file mode 100644 index 000000000000..c8f8e9a1517b --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/c/Makefile @@ -0,0 +1,146 @@ +#/ +# @license Apache-2.0 +# +# Copyright (c) 2026 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +#/ + +# VARIABLES # + +ifndef VERBOSE + QUIET := @ +else + QUIET := +endif + +# Determine the OS ([1][1], [2][2]). +# +# [1]: https://en.wikipedia.org/wiki/Uname#Examples +# [2]: http://stackoverflow.com/a/27776822/2225624 +OS ?= $(shell uname) +ifneq (, $(findstring MINGW,$(OS))) + OS := WINNT +else +ifneq (, $(findstring MSYS,$(OS))) + OS := WINNT +else +ifneq (, $(findstring CYGWIN,$(OS))) + OS := WINNT +else +ifneq (, $(findstring Windows_NT,$(OS))) + OS := WINNT +endif +endif +endif +endif + +# Define the program used for compiling C source files: +ifdef C_COMPILER + CC := $(C_COMPILER) +else + CC := gcc +endif + +# Define the command-line options when compiling C files: +CFLAGS ?= \ + -std=c99 \ + -O3 \ + -Wall \ + -pedantic + +# Determine whether to generate position independent code ([1][1], [2][2]). +# +# [1]: https://gcc.gnu.org/onlinedocs/gcc/Code-Gen-Options.html#Code-Gen-Options +# [2]: http://stackoverflow.com/questions/5311515/gcc-fpic-option +ifeq ($(OS), WINNT) + fPIC ?= +else + fPIC ?= -fPIC +endif + +# List of includes (e.g., `-I /foo/bar -I /beep/boop/include`): +INCLUDE ?= + +# List of source files: +SOURCE_FILES ?= + +# List of libraries (e.g., `-lopenblas -lpthread`): +LIBRARIES ?= + +# List of library paths (e.g., `-L /foo/bar -L /beep/boop`): +LIBPATH ?= + +# List of C targets: +c_targets := example.out + + +# RULES # + +#/ +# Compiles source files. +# +# @param {string} [C_COMPILER] - C compiler (e.g., `gcc`) +# @param {string} [CFLAGS] - C compiler options +# @param {(string|void)} [fPIC] - compiler flag determining whether to generate position independent code (e.g., `-fPIC`) +# @param {string} [INCLUDE] - list of includes (e.g., `-I /foo/bar -I /beep/boop/include`) +# @param {string} [SOURCE_FILES] - list of source files +# @param {string} [LIBPATH] - list of library paths (e.g., `-L /foo/bar -L /beep/boop`) +# @param {string} [LIBRARIES] - list of libraries (e.g., `-lopenblas -lpthread`) +# +# @example +# make +# +# @example +# make all +#/ +all: $(c_targets) + +.PHONY: all + +#/ +# Compiles C source files. +# +# @private +# @param {string} CC - C compiler (e.g., `gcc`) +# @param {string} CFLAGS - C compiler options +# @param {(string|void)} fPIC - compiler flag determining whether to generate position independent code (e.g., `-fPIC`) +# @param {string} INCLUDE - list of includes (e.g., `-I /foo/bar`) +# @param {string} SOURCE_FILES - list of source files +# @param {string} LIBPATH - list of library paths (e.g., `-L /foo/bar`) +# @param {string} LIBRARIES - list of libraries (e.g., `-lopenblas`) +#/ +$(c_targets): %.out: %.c + $(QUIET) $(CC) $(CFLAGS) $(fPIC) $(INCLUDE) -o $@ $(SOURCE_FILES) $< $(LIBPATH) -lm $(LIBRARIES) + +#/ +# Runs compiled examples. +# +# @example +# make run +#/ +run: $(c_targets) + $(QUIET) ./$< + +.PHONY: run + +#/ +# Removes generated files. +# +# @example +# make clean +#/ +clean: + $(QUIET) -rm -f *.o *.out + +.PHONY: clean diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/c/example.c b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/c/example.c new file mode 100644 index 000000000000..eb688a56366c --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/c/example.c @@ -0,0 +1,40 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +#include "stdlib/stats/base/dists/bradford/logpdf.h" +#include +#include + +static double random_uniform( const double min, const double max ) { + double v = (double)rand() / ( (double)RAND_MAX + 1.0 ); + return min + ( v*(max-min) ); +} + +int main( void ) { + double x; + double c; + double y; + int i; + + for ( i = 0; i < 10; i++ ) { + x = random_uniform( 0.0, 1.0 ); + c = random_uniform( 0.01, 10.0 ); + y = stdlib_base_dists_bradford_logpdf( x, c ); + printf( "x: %lf, c: %lf, ln(f(x;c)): %lf\n", x, c, y ); + } +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/index.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/index.js new file mode 100644 index 000000000000..8f3a1ab7e421 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/examples/index.js @@ -0,0 +1,31 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +var uniform = require( '@stdlib/random/array/uniform' ); +var logEachMap = require( '@stdlib/console/log-each-map' ); +var logpdf = require( './../lib' ); + +var opts = { + 'dtype': 'float64' +}; +var c = uniform( 10, 0.0, 1.0, opts ); +var x = uniform( 10, 0.1, 10.0, opts ); + +logEachMap( 'x: %0.4f, c: %0.4f, ln(f(x;c)): %0.4f', x, c, logpdf ); diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/include.gypi b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/include.gypi new file mode 100644 index 000000000000..ecfaf82a3279 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/include.gypi @@ -0,0 +1,53 @@ +# @license Apache-2.0 +# +# Copyright (c) 2025 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +# A GYP include file for building a Node.js native add-on. +# +# Main documentation: +# +# [1]: https://gyp.gsrc.io/docs/InputFormatReference.md +# [2]: https://gyp.gsrc.io/docs/UserDocumentation.md +{ + # Define variables to be used throughout the configuration for all targets: + 'variables': { + # Source directory: + 'src_dir': './src', + + # Include directories: + 'include_dirs': [ + ' + */ + function logpdf( x ) { + if ( isnan( x ) ) { + return NaN; + } + if ( x < 0.0 || x > 1.0 ) { + return NINF; + } + return ln( c ) - ln( 1.0 + ( c*x ) ) - ln( k ); + } +} + + +// EXPORTS // + +module.exports = factory; diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/index.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/index.js new file mode 100644 index 000000000000..4c13a63b279e --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/index.js @@ -0,0 +1,54 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +/** +* Bradford distribution logarithm of probability density function (logPDF). +* +* @module @stdlib/stats/base/dists/bradford/logpdf +* +* @example +* var logpdf = require( '@stdlib/stats/base/dists/bradford/logpdf' ); +* +* var y = logpdf( 0.5, 5.0 ); +* // returns ~-0.227 +* +* var myLogPDF = logpdf.factory( 5.0 ); +* y = myLogPDF( 0.5 ); +* // returns ~-0.227 +* +* y = myLogPDF( 1.0 ); +* // returns ~-0.766 +*/ + +// MODULES // + +var setReadOnly = require( '@stdlib/utils/define-nonenumerable-read-only-property' ); +var main = require( './main.js' ); +var factory = require( './factory.js' ); + + +// MAIN // + +setReadOnly( main, 'factory', factory ); + + +// EXPORTS // + +module.exports = main; diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/main.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/main.js new file mode 100644 index 000000000000..25a1bed7a197 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/main.js @@ -0,0 +1,89 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var ln = require( '@stdlib/math/base/special/ln' ); +var log1p = require( '@stdlib/math/base/special/log1p' ); +var NINF = require( '@stdlib/constants/float64/ninf' ); + + +// MAIN // + +/** +* Evaluates the logarithm of the probability density function (PDF) for a Bradford distribution with shape parameter `c` at a value `x`. +* +* @param {number} x - input value +* @param {PositiveNumber} c - shape parameter +* @returns {number} evaluated logPDF +* +* @example +* var y = logpdf( 0.1, 0.1 ); +* // returns ~0.038 +* +* @example +* var y = logpdf( 0.5, 5.0 ); +* // returns ~-0.227 +* +* @example +* var y = logpdf( 1.0, 10.0 ); +* // returns ~-0.970 +* +* @example +* var y = logpdf( 2.0, 0.5 ); +* // returns -Infinity +* +* @example +* var y = logpdf( -1.0, 0.5 ); +* // returns -Infinity +* +* @example +* var y = logpdf( 0.5, 0.0 ); +* // returns NaN +* +* @example +* var y = logpdf( 0.5, -5.0 ); +* // returns NaN +* +* @example +* var y = logpdf( NaN, 1.0 ); +* // returns NaN +* +* @example +* var y = logpdf( 1.0, NaN ); +* // returns NaN +*/ +function logpdf( x, c ) { + var k; + if ( isnan( c ) || isnan( x ) || c <= 0.0 ) { + return NaN; + } + if ( x < 0.0 || x > 1.0 ) { + return NINF; + } + k = log1p( c ); + return ln( c ) - ln( 1.0 + ( c*x ) ) - ln( k ); +} + + +// EXPORTS // + +module.exports = logpdf; diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/native.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/native.js new file mode 100644 index 000000000000..f35ab4dc7d6d --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/lib/native.js @@ -0,0 +1,79 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var addon = require( './../src/addon.node' ); + + +// MAIN // + +/** +* Evaluates the logarithm of the probability density function (logPDF) for a Bradford distribution with shape parameter `c` at a value `x`. +* +* @private +* @param {number} x - input value +* @param {PositiveNumber} c - shape parameter +* @returns {number} evaluated logPDF +* +* @example +* var v = logpdf( 0.1, 0.1 ); +* // returns ~0.038 +* +* @example +* var v = logpdf( 0.5, 5.0 ); +* // returns ~-0.227 +* +* @example +* var v = logpdf( 1.0, 10.0 ); +* // returns ~-0.970 +* +* @example +* var v = logpdf( 2.0, 0.5 ); +* // returns -Infinity +* +* @example +* var v = logpdf( -1.0, 0.5 ); +* // returns -Infinity +* +* @example +* var v = logpdf( 0.5, 0.0 ); +* // returns NaN +* +* @example +* var v = logpdf( 0.5, -5.0 ); +* // returns NaN +* +* @example +* var v = logpdf( NaN, 1.0 ); +* // returns NaN +* +* @example +* var v = logpdf( 1.0, NaN ); +* // returns NaN +*/ +function logpdf( x, c ) { + return addon( x, c ); +} + + +// EXPORTS // + +module.exports = logpdf; diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/manifest.json b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/manifest.json new file mode 100644 index 000000000000..6825d321a77a --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/manifest.json @@ -0,0 +1,86 @@ +{ + "options": { + "task": "build", + "wasm": false + }, + "fields": [ + { + "field": "src", + "resolve": true, + "relative": true + }, + { + "field": "include", + "resolve": true, + "relative": true + }, + { + "field": "libraries", + "resolve": false, + "relative": false + }, + { + "field": "libpath", + "resolve": true, + "relative": false + } + ], + "confs": [ + { + "task": "build", + "wasm": false, + "src": [ + "./src/main.c" + ], + "include": [ + "./include" + ], + "libraries": [], + "libpath": [], + "dependencies": [ + "@stdlib/math/base/napi/binary", + "@stdlib/math/base/assert/is-nan", + "@stdlib/math/base/special/ln", + "@stdlib/math/base/special/log1p", + "@stdlib/constants/float64/ninf" + ] + }, + { + "task": "benchmark", + "wasm": false, + "src": [ + "./src/main.c" + ], + "include": [ + "./include" + ], + "libraries": [], + "libpath": [], + "dependencies": [ + "@stdlib/constants/float64/eps", + "@stdlib/math/base/assert/is-nan", + "@stdlib/math/base/special/ln", + "@stdlib/math/base/special/log1p", + "@stdlib/constants/float64/ninf" + ] + }, + { + "task": "examples", + "wasm": false, + "src": [ + "./src/main.c" + ], + "include": [ + "./include" + ], + "libraries": [], + "libpath": [], + "dependencies": [ + "@stdlib/math/base/assert/is-nan", + "@stdlib/math/base/special/ln", + "@stdlib/math/base/special/log1p", + "@stdlib/constants/float64/ninf" + ] + } + ] +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/package.json b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/package.json new file mode 100644 index 000000000000..7c454e0914ec --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/package.json @@ -0,0 +1,69 @@ +{ + "name": "@stdlib/stats/base/dists/bradford/logpdf", + "version": "0.0.0", + "description": "Bradford distribution logarithm of probability density function (logPDF).", + "license": "Apache-2.0", + "author": { + "name": "The Stdlib Authors", + "url": "https://github.com/stdlib-js/stdlib/graphs/contributors" + }, + "contributors": [ + { + "name": "The Stdlib Authors", + "url": "https://github.com/stdlib-js/stdlib/graphs/contributors" + } + ], + "main": "./lib", + "gypfile": true, + "directories": { + "benchmark": "./benchmark", + "doc": "./docs", + "example": "./examples", + "include": "./include", + "lib": "./lib", + "src": "./src", + "test": "./test" + }, + "types": "./docs/types", + "scripts": {}, + "homepage": "https://github.com/stdlib-js/stdlib", + "repository": { + "type": "git", + "url": "git://github.com/stdlib-js/stdlib.git" + }, + "bugs": { + "url": "https://github.com/stdlib-js/stdlib/issues" + }, + "dependencies": {}, + "devDependencies": {}, + "engines": { + "node": ">=0.10.0", + "npm": ">2.7.0" + }, + "os": [ + "aix", + "darwin", + "freebsd", + "linux", + "macos", + "openbsd", + "sunos", + "win32", + "windows" + ], + "keywords": [ + "stdlib", + "stdmath", + "statistics", + "stats", + "distribution", + "dist", + "bradford", + "continuous", + "skewed", + "logpdf", + "log", + "probability", + "density" + ] +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/Makefile b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/Makefile new file mode 100644 index 000000000000..2caf905cedbe --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/Makefile @@ -0,0 +1,70 @@ +#/ +# @license Apache-2.0 +# +# Copyright (c) 2026 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +#/ + +# VARIABLES # + +ifndef VERBOSE + QUIET := @ +else + QUIET := +endif + +# Determine the OS ([1][1], [2][2]). +# +# [1]: https://en.wikipedia.org/wiki/Uname#Examples +# [2]: http://stackoverflow.com/a/27776822/2225624 +OS ?= $(shell uname) +ifneq (, $(findstring MINGW,$(OS))) + OS := WINNT +else +ifneq (, $(findstring MSYS,$(OS))) + OS := WINNT +else +ifneq (, $(findstring CYGWIN,$(OS))) + OS := WINNT +else +ifneq (, $(findstring Windows_NT,$(OS))) + OS := WINNT +endif +endif +endif +endif + + +# RULES # + +#/ +# Removes generated files for building an add-on. +# +# @example +# make clean-addon +#/ +clean-addon: + $(QUIET) -rm -f *.o *.node + +.PHONY: clean-addon + +#/ +# Removes generated files. +# +# @example +# make clean +#/ +clean: clean-addon + +.PHONY: clean diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/addon.c b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/addon.c new file mode 100644 index 000000000000..5047cbab1fc6 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/addon.c @@ -0,0 +1,22 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +#include "stdlib/stats/base/dists/bradford/logpdf.h" +#include "stdlib/math/base/napi/binary.h" + +STDLIB_MATH_BASE_NAPI_MODULE_DD_D( stdlib_base_dists_bradford_logpdf ) diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/main.c b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/main.c new file mode 100644 index 000000000000..f916a28ac964 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/src/main.c @@ -0,0 +1,46 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +#include "stdlib/stats/base/dists/bradford/logpdf.h" +#include "stdlib/math/base/assert/is_nan.h" +#include "stdlib/math/base/special/log1p.h" +#include "stdlib/math/base/special/ln.h" +#include "stdlib/constants/float64/ninf.h" + +/** +* Evaluates the logarithm of the probability density function (PDF) for a Bradford distribution with shape parameter `c` at a value `x`. +* +* @param x input value +* @param c shape parameter +* @return evaluated logPDF +* +* @example +* double y = stdlib_base_dists_bradford_logpdf( 0.5, 5.0 ); +* // returns ~-0.227 +*/ +double stdlib_base_dists_bradford_logpdf( const double x, const double c ) { + double k; + if ( stdlib_base_is_nan( x ) || stdlib_base_is_nan( c ) || c <= 0.0 ) { + return 0.0/0.0; // NaN + } + if ( x < 0.0 || x > 1.0 ) { + return STDLIB_CONSTANT_FLOAT64_NINF; + } + k = stdlib_base_log1p( c ); + return stdlib_base_ln( c ) - stdlib_base_ln( 1.0 + ( c*x ) ) - stdlib_base_ln( k ); +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/large_c_log.json b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/large_c_log.json new file mode 100644 index 000000000000..57670dfea54f --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/large_c_log.json @@ -0,0 +1 @@ +{"x": [0.0, 0.001001001001001001, 0.002002002002002002, 0.003003003003003003, 0.004004004004004004, 0.005005005005005005, 0.006006006006006006, 0.007007007007007007, 0.008008008008008008, 0.009009009009009009, 0.01001001001001001, 0.011011011011011011, 0.012012012012012012, 0.013013013013013013, 0.014014014014014014, 0.015015015015015015, 0.016016016016016016, 0.017017017017017015, 0.018018018018018018, 0.01901901901901902, 0.02002002002002002, 0.02102102102102102, 0.022022022022022022, 0.023023023023023025, 0.024024024024024024, 0.025025025025025023, 0.026026026026026026, 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-0.9663883996906056, -0.967560390599147, -0.9687314445459912, -0.9699015627280139]} diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/runner.py b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/runner.py new file mode 100644 index 000000000000..8e1ebba927ec --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/runner.py @@ -0,0 +1,85 @@ +#!/usr/bin/env python +# +# @license Apache-2.0 +# +# Copyright (c) 2026 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +"""Generate fixtures.""" + +import os +import json +import numpy as np +from scipy.stats import bradford + +# Get the file path: +FILE = os.path.realpath(__file__) + +# Extract the directory in which this file resides: +DIR = os.path.dirname(FILE) + + +def gen(x, c, name): + """Generate fixture data and write to file. + + # Arguments + + * `x`: domain + * `c`: shape parameter + * `name::str`: output filename + + # Examples + + ``` python + python> x = linspace(0, 1, 2001) + python> c = linspace(0.1, 1000, 2001) + python> gen(x, c, './data.json') + ``` + """ + y = bradford.logpdf(x, c) + + # Store data to be written to file as a dictionary: + data = { + "x": x.tolist(), + "c": c.tolist(), + "expected": y.tolist() + } + + # Based on the script directory, create an output filepath: + filepath = os.path.join(DIR, name) + + # Write the data to the output filepath as JSON: + with open(filepath, "w", encoding="utf-8") as outfile: + json.dump(data, outfile) + + +def main(): + """Generate fixture data.""" + x = np.linspace(0, 1, 1000) + + # Small shape parameter: + c = np.linspace(0.1, 1, 1000) + gen(x, c, "small_c_log.json") + + # Medium shape parameter: + c = np.linspace(1, 10, 1000) + gen(x, c, "medium_c_log.json") + + # Large shape parameter: + c = np.linspace(10, 100, 1000) + gen(x, c, "large_c_log.json") + + +if __name__ == "__main__": + main() diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/small_c_log.json b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/small_c_log.json new file mode 100644 index 000000000000..315622776a31 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/fixtures/python/small_c_log.json @@ -0,0 +1 @@ +{"x": [0.0, 0.001001001001001001, 0.002002002002002002, 0.003003003003003003, 0.004004004004004004, 0.005005005005005005, 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License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var tape = require( 'tape' ); +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var abs = require( '@stdlib/math/base/special/abs' ); +var EPS = require( '@stdlib/constants/float64/eps' ); +var NINF = require( '@stdlib/constants/float64/ninf' ); +var factory = require( './../lib/factory.js' ); + + +// FIXTURES // + +var smallC = require( './fixtures/python/small_c_log.json' ); +var mediumC = require( './fixtures/python/medium_c_log.json' ); +var largeC = require( './fixtures/python/large_c_log.json' ); + + +// TESTS // + +tape( 'main export is a function', function test( t ) { + t.ok( true, __filename ); + t.strictEqual( typeof factory, 'function', 'main export is a function' ); + t.end(); +}); + +tape( 'the function returns a function', function test( t ) { + var logpdf = factory( 1.0 ); + t.strictEqual( typeof logpdf, 'function', 'returns expected value' ); + t.end(); +}); + +tape( 'if provided `NaN` for any parameter, the created function returns `NaN`', function test( t ) { + var logpdf; + var y; + + logpdf = factory( 1.0 ); + y = logpdf( NaN ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + logpdf = factory( NaN ); + y = logpdf( 0.0 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + logpdf = factory( NaN ); + y = logpdf( NaN ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + t.end(); +}); + +tape( 'if provided `c <= 0`, the created function always returns `NaN`', function test( t ) { + var logpdf; + var y; + + logpdf = factory( -1.0 ); + y = logpdf( 1.0 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + y = logpdf( 0.5 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + y = logpdf( 0.0 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + t.end(); +}); + +tape( 'if provided a valid `c`, the function returns `-Infinity` when `x` is outside [0,1]', function test( t ) { + var logpdf; + var y; + + logpdf = factory( 1.0 ); + y = logpdf( -1.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + y = logpdf( -0.5 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + y = logpdf( 1.5 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + y = logpdf( 10.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + t.end(); +}); + +tape( 'the created function evaluates the logpdf for `x` given small `c`', function test( t ) { + var expected; + var logpdf; + var delta; + var tol; + var c; + var i; + var x; + var y; + + expected = smallC.expected; + x = smallC.x; + c = smallC.c; + for ( i = 0; i < x.length; i++ ) { + logpdf = factory( c[i] ); + y = logpdf( x[i] ); + if ( y === expected[i] ) { + t.strictEqual( y, expected[i], 'x: '+x[i]+'. c: '+c[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[ i ] ); + tol = 750.0 * EPS * abs( expected[ i ] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[ i ]+'. c: '+c[i]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + t.end(); +}); + +tape( 'the created function evaluates the logpdf for `x` given a medium `c`', function test( t ) { + var expected; + var logpdf; + var delta; + var tol; + var c; + var i; + var x; + var y; + + expected = mediumC.expected; + x = mediumC.x; + c = mediumC.c; + for ( i = 0; i < x.length; i++ ) { + logpdf = factory( c[i] ); + y = logpdf( x[i] ); + if ( y === expected[i] ) { + t.strictEqual( y, expected[i], 'x: '+x[i]+'. c: '+c[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[ i ] ); + tol = 150.0 * EPS * abs( expected[ i ] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[ i ]+'. c: '+c[i]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + t.end(); +}); + +tape( 'the created function evaluates the logpdf for `x` given a large `c`', function test( t ) { + var expected; + var logpdf; + var delta; + var tol; + var c; + var i; + var x; + var y; + + expected = largeC.expected; + x = largeC.x; + c = largeC.c; + for ( i = 0; i < x.length; i++ ) { + logpdf = factory( c[i] ); + y = logpdf( x[i] ); + if ( y === expected[i] ) { + t.strictEqual( y, expected[i], 'x: '+x[i]+'. c: '+c[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[ i ] ); + tol = 1350.0 * EPS * abs( expected[ i ] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[ i ]+'. c: '+c[i]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + t.end(); +}); diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.js new file mode 100644 index 000000000000..c8fb79a7c82a --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.js @@ -0,0 +1,38 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var tape = require( 'tape' ); +var logpdf = require( './../lib' ); + + +// TESTS // + +tape( 'main export is a function', function test( t ) { + t.ok( true, __filename ); + t.strictEqual( typeof logpdf, 'function', 'main export is a function' ); + t.end(); +}); + +tape( 'attached to the main export is a factory method for generating `logpdf` functions', function test( t ) { + t.strictEqual( typeof logpdf.factory, 'function', 'exports a factory method' ); + t.end(); +}); diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.logpdf.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.logpdf.js new file mode 100644 index 000000000000..653bb95aba84 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.logpdf.js @@ -0,0 +1,165 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var tape = require( 'tape' ); +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var abs = require( '@stdlib/math/base/special/abs' ); +var PINF = require( '@stdlib/constants/float64/pinf' ); +var NINF = require( '@stdlib/constants/float64/ninf' ); +var EPS = require( '@stdlib/constants/float64/eps' ); +var logpdf = require( './../lib' ); + + +// FIXTURES // + +var smallC = require( './fixtures/python/small_c_log.json' ); +var mediumC = require( './fixtures/python/medium_c_log.json' ); +var largeC = require( './fixtures/python/large_c_log.json' ); + + +// TESTS // + +tape( 'main export is a function', function test( t ) { + t.ok( true, __filename ); + t.strictEqual( typeof logpdf, 'function', 'main export is a function' ); + t.end(); +}); + +tape( 'if provided `NaN` for any parameter, the function returns `NaN`', function test( t ) { + var y; + + y = logpdf( NaN, 1.0 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + y = logpdf( 0.0, NaN ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + t.end(); +}); + +tape( 'if provided `c <= 0`, the function returns `NaN`', function test( t ) { + var y; + + y = logpdf( 0.0, 0.0 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + y = logpdf( 0.5, -1.0 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + y = logpdf( 1.0, NINF ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + t.end(); +}); + +tape( 'if provided a number outside [0,1] for `x` and a valid `c`, the function returns `-Infinity`', function test( t ) { + var y; + + y = logpdf( 2.0, 1.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + y = logpdf( -0.5, 1.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + y = logpdf( NINF, 1.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + y = logpdf( PINF, 1.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + t.end(); +}); + +tape( 'the function evaluates the logpdf for `x` given small parameter `c`', function test( t ) { + var expected; + var delta; + var tol; + var x; + var c; + var y; + var i; + + expected = smallC.expected; + x = smallC.x; + c = smallC.c; + for ( i = 0; i < x.length; i++ ) { + y = logpdf( x[i], c[i] ); + if ( y === expected[i] ) { + t.strictEqual( y, expected[i], 'x: '+x[i]+'. c:'+c[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[ i ] ); + tol = 750.0 * EPS * abs( expected[ i ] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[ i ]+'. c: '+c[i]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + t.end(); +}); + +tape( 'the function evaluates the logpdf for `x` given medium parameter `c`', function test( t ) { + var expected; + var delta; + var tol; + var x; + var c; + var y; + var i; + + expected = mediumC.expected; + x = mediumC.x; + c = mediumC.c; + for ( i = 0; i < x.length; i++ ) { + y = logpdf( x[i], c[i] ); + if ( y === expected[i] ) { + t.strictEqual( y, expected[i], 'x: '+x[i]+'. c:'+c[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[ i ] ); + tol = 150.0 * EPS * abs( expected[ i ] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[ i ]+'. c: '+c[i]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + t.end(); +}); + +tape( 'the function evaluates the logpdf for `x` given large parameter `c`', function test( t ) { + var expected; + var delta; + var tol; + var x; + var c; + var y; + var i; + + expected = largeC.expected; + x = largeC.x; + c = largeC.c; + for ( i = 0; i < x.length; i++ ) { + y = logpdf( x[i], c[i] ); + if ( y === expected[i] ) { + t.strictEqual( y, expected[i], 'x: '+x[i]+'. c: '+c[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[ i ] ); + tol = 1350.0 * EPS * abs( expected[ i ] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[ i ]+'. c: '+c[i]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + t.end(); +}); diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.native.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.native.js new file mode 100644 index 000000000000..46be450fbd68 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/test/test.native.js @@ -0,0 +1,180 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2026 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var resolve = require( 'path' ).resolve; +var tape = require( 'tape' ); +var tryRequire = require( '@stdlib/utils/try-require' ); +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var abs = require( '@stdlib/math/base/special/abs' ); +var PINF = require( '@stdlib/constants/float64/pinf' ); +var NINF = require( '@stdlib/constants/float64/ninf' ); +var EPS = require( '@stdlib/constants/float64/eps' ); + + +// FIXTURES // + +var smallC = require( './fixtures/python/small_c_log.json' ); +var mediumC = require( './fixtures/python/medium_c_log.json' ); +var largeC = require( './fixtures/python/large_c_log.json' ); + + +// VARIABLES // + +var logpdf = tryRequire( resolve( __dirname, './../lib/native.js' ) ); +var opts = { + 'skip': ( logpdf instanceof Error ) +}; + + +// TESTS // + +tape( 'main export is a function', opts, function test( t ) { + t.ok( true, __filename ); + t.strictEqual( typeof logpdf, 'function', 'main export is a function' ); + t.end(); +}); + +tape( 'if provided `NaN` for any parameter, the function returns `NaN`', opts, function test( t ) { + var y; + + y = logpdf( NaN, 1.0 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + y = logpdf( 0.0, NaN ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + t.end(); +}); + +tape( 'if provided `c <= 0`, the function returns `NaN`', opts, function test( t ) { + var y; + + y = logpdf( 0.0, 0.0 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + y = logpdf( 0.5, -1.0 ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + y = logpdf( 1.0, NINF ); + t.strictEqual( isnan( y ), true, 'returns expected value' ); + + t.end(); +}); + +tape( 'if provided a number outside [0,1] for `x` and a valid `c`, the function returns `-Infinity`', opts, function test( t ) { + var y; + + y = logpdf( 2.0, 1.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + y = logpdf( -0.5, 1.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + y = logpdf( NINF, 1.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + y = logpdf( PINF, 1.0 ); + t.strictEqual( y, NINF, 'returns expected value' ); + + t.end(); +}); + +tape( 'the function evaluates the logpdf for `x` given small parameter `c`', opts, function test( t ) { + var expected; + var delta; + var tol; + var x; + var c; + var y; + var i; + + expected = smallC.expected; + x = smallC.x; + c = smallC.c; + for ( i = 0; i < x.length; i++ ) { + y = logpdf( x[i], c[i] ); + if ( expected[i] !== null ) { + if ( y === expected[i] ) { + t.strictEqual( y, expected[i], 'x: '+x[i]+', c: '+c[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[i] ); + tol = 800.0 * EPS * abs( expected[i] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[i]+'. c: '+c[i]+'. y: '+y+'. E: '+expected[i]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + } + t.end(); +}); + +tape( 'the function evaluates the logpdf for `x` given medium parameter `c`', opts, function test( t ) { + var expected; + var delta; + var tol; + var x; + var c; + var y; + var i; + + expected = mediumC.expected; + x = mediumC.x; + c = mediumC.c; + for ( i = 0; i < x.length; i++ ) { + y = logpdf( x[i], c[i] ); + if ( expected[i] !== null ) { + if ( y === expected[i] ) { + t.strictEqual( y, expected[i], 'x: '+x[i]+', c: '+c[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[i] ); + tol = 150.0 * EPS * abs( expected[i] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[i]+'. c: '+c[i]+'. y: '+y+'. E: '+expected[i]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + } + t.end(); +}); + +tape( 'the function evaluates the logpdf for `x` given large parameter `c`', opts, function test( t ) { + var expected; + var delta; + var tol; + var x; + var c; + var y; + var i; + + expected = largeC.expected; + x = largeC.x; + c = largeC.c; + for ( i = 0; i < x.length; i++ ) { + y = logpdf( x[i], c[i] ); + if ( expected[i] !== null ) { + if ( y === expected[i] ) { + t.strictEqual( y, expected[i], 'x: '+x[i]+', c: '+c[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[i] ); + tol = 1350.0 * EPS * abs( expected[i] ); + t.ok( delta <= tol, 'within tolerance. x: '+x[i]+'. c: '+c[i]+'. y: '+y+'. E: '+expected[i]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + } + t.end(); +}); From ebc937ab262ef57ccefc35f7315210b1e0c2e4e6 Mon Sep 17 00:00:00 2001 From: Bhargav Dabhade Date: Fri, 30 Jan 2026 02:38:06 +0000 Subject: [PATCH 2/2] fix: update-copyright-years Signed-off-by: Bhargav Dabhade --- type: pre_commit_static_analysis_report description: Results of running static analysis checks when committing changes. report: - task: lint_filenames status: passed - task: lint_editorconfig status: passed - task: lint_markdown status: na - task: lint_package_json status: na - task: lint_repl_help status: na - task: lint_javascript_src status: na - task: lint_javascript_cli status: na - task: lint_javascript_examples status: na - task: lint_javascript_tests status: na - task: lint_javascript_benchmarks status: passed - task: lint_python status: na - task: lint_r status: na - task: lint_c_src status: na - task: lint_c_examples status: na - task: lint_c_benchmarks status: na - task: lint_c_tests_fixtures status: na - task: lint_shell status: na - task: lint_typescript_declarations status: passed - task: lint_typescript_tests status: na - task: lint_license_headers status: passed --- --- .../base/dists/bradford/logpdf/benchmark/benchmark.native.js | 2 +- .../@stdlib/stats/base/dists/bradford/logpdf/binding.gyp | 2 +- .../@stdlib/stats/base/dists/bradford/logpdf/include.gypi | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.native.js b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.native.js index 27e49fb163bf..6b671ada9c35 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.native.js +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/benchmark/benchmark.native.js @@ -1,7 +1,7 @@ /** * @license Apache-2.0 * -* Copyright (c) 2025 The Stdlib Authors. +* Copyright (c) 2026 The Stdlib Authors. * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/binding.gyp b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/binding.gyp index 68a1ca11d160..0d6508a12e99 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/binding.gyp +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/binding.gyp @@ -1,6 +1,6 @@ # @license Apache-2.0 # -# Copyright (c) 2025 The Stdlib Authors. +# Copyright (c) 2026 The Stdlib Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. diff --git a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/include.gypi b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/include.gypi index ecfaf82a3279..bee8d41a2caf 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/include.gypi +++ b/lib/node_modules/@stdlib/stats/base/dists/bradford/logpdf/include.gypi @@ -1,6 +1,6 @@ # @license Apache-2.0 # -# Copyright (c) 2025 The Stdlib Authors. +# Copyright (c) 2026 The Stdlib Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License.