execR/dxapp.json at master · robbyjo/execR · GitHub

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{
  "name": "execR",
  "title": "execR",
  "summary": "App to execute any R code.",
  "tags": [
    "Statistics"
  ],
  "dxapi": "1.0.0",
  "version": "0.0.1",
  "inputSpec": [
    {
      "name": "r_code",
      "label": "Main R code",
      "help": "Main R code. If you have multiple R codes that you source, put them into a tarball. This tarball will be extracted to /data directory and you MUST name your main R code main.R.",
      "class": "file",
      "patterns": ["*.r", "*.R", "*.tar.gz", "*.tar.bz2"],
      "optional": false
    },
    {
      "name": "output_file",
      "label": "Output file name",
      "class": "string",
      "optional": false
    },
    {
      "name": "param_str",
      "label": "Parameter String",
      "help": "Optional parameter string. Multiple parameters should be delimited. Choice of delimiter is up to you.",
      "class": "string",
      "optional": true
    },
    {
      "name": "prologue_shell",
      "label": "Prologue shell file",
      "help": "An optional shell file to load BEFORE executing R file. Useful for preprocessing data or installing R packages.",
      "class": "file",
      "patterns": ["*.sh"],
      "optional": true
    },
    {
      "name": "epilogue_shell",
      "label": "Epilogue shell file",
      "help": "An optional shell file to load AFTER executing R file. Useful for zipping up results. Remember, you can only output ONE file. If you have multiple result files, you MUST zip them up.",
      "class": "file",
      "patterns": ["*.sh"],
      "optional": true
    },
    {
      "name": "input_file1",
      "label": "Input file 1",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "input_file2",
      "label": "Input file 2",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "input_file3",
      "label": "Input file 3",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "input_file4",
      "label": "Input file 4",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "input_file5",
      "label": "Input file 5",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "input_file6",
      "label": "Input file 6",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "input_file7",
      "label": "Input file 7",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "input_file8",
      "label": "Input file 8",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "input_file9",
      "label": "Input file 9",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "input_file10",
      "label": "Input file 10",
      "class": "file",
      "patterns": ["*.*"],
      "optional": true
    },
    {
      "name": "debug",
	  "label": "Debug output",
	  "help": "Show debug information in command line mode. Set 0 to disable. The greater the number the more verbose the output.",
      "class": "int",
      "optional": true,
      "default": 0
    }
  ],
  "outputSpec": [
    {
      "name": "results",
      "class": "file"
    }
  ],
  "runSpec": {
    "timeoutPolicy": {
      "*": {
        "days": 30
      }
    },
    "systemRequirements": {
      "main": {
        "instanceType": "mem3_ssd1_x4"
      }
    },
    "file": "src/execR.sh",
    "release": "14.04",
    "interpreter": "bash",
    "distribution": "Ubuntu"
  },
  "details": {
    "contactEmail": "robbyjo@gmail.com",
    "upstreamVersion": "0.0.1",
    "upstreamAuthor": "Roby Joehanes",
    "upstreamUrl": "https://github.com/robbyjo/execR",
    "upstreamLicenses": ["GPLv3"]
  },
  "access": {
    "network": [
      "*"
    ]
  },
  "authorizedUsers" : [
    "PUBLIC"
  ]
}