Support weighted clustering (#11)

* Support weighted clustering

* Add square_clustering!  Also, upgrade style to latest python-graphblas

* Add generalized_degree

* Install networkx from git

* to_networkx

Author: eriknw

.github/workflows/test.yml

@@ -30,16 +30,18 @@ jobs:
           activate-environment: testing
       - name: Install dependencies
         run: |
-          conda install -c conda-forge python-graphblas networkx scipy \
-            pytest coverage black flake8 flake8-comprehensions flake8-bugbear
-          pip install -e .
+          conda install -c conda-forge python-graphblas scipy pandas \
+            pytest-cov pytest-randomly black flake8-comprehensions flake8-bugbear
+            # matplotlib lxml pygraphviz pydot sympy  # Extra networkx deps we don't need yet
+          pip install git+https://github.com/networkx/networkx.git@main --no-deps
+          pip install -e . --no-deps
       - name: Style checks
         run: |
           flake8
           black . --check --diff
       - name: PyTest
         run: |
-          coverage run --branch -m pytest
+          coverage run --branch -m pytest -v
           coverage xml
       - name: Coverage
         uses: codecov/codecov-action@v2

graphblas_algorithms/algorithms/__init__.py

@@ -1,3 +1,3 @@
-from .cluster import average_clustering, clustering, transitivity, triangles
-from .link_analysis import pagerank
-from .reciprocity import overall_reciprocity, reciprocity
+from .cluster import *
+from .link_analysis import *
+from .reciprocity import *