diff --git a/README.md b/README.md
index 4d1265699..f8a09733b 100644
--- a/README.md
+++ b/README.md
@@ -37,7 +37,7 @@ ObjectStack is a metadata-driven platform built on three foundational protocols:
   - [Quick Start Examples](./examples/) - CRM, Todo, and plugin examples
   
 - **Protocol References:**
-  - [Protocol Reference](./content/docs/references/) - All 70 protocol specifications
+  - [Protocol Reference](./content/docs/references/) - All 109 protocol specifications
   - [ObjectQL](./content/docs/objectql/) - Data layer documentation
   - [ObjectUI](./content/docs/objectui/) - UI layer documentation
   - [ObjectOS](./content/docs/objectos/) - System layer documentation
diff --git a/content/docs/references/index.mdx b/content/docs/references/index.mdx
index cd495737b..f12bbfd6b 100644
--- a/content/docs/references/index.mdx
+++ b/content/docs/references/index.mdx
@@ -1,6 +1,6 @@
 ---
 title: Protocol Reference
-description: Complete reference of all 70 ObjectStack protocol specifications
+description: Complete reference of all 109 ObjectStack protocol specifications
 ---
 
 # Protocol Reference
@@ -11,26 +11,27 @@ This is the complete reference for all protocol specifications in the ObjectStac
 
 | Module | Protocols | Description |
 | :--- | :---: | :--- |
-| [Data Protocol](#data-protocol) | 8 | Core business logic and data modeling (ObjectQL) |
+| [Data Protocol](#data-protocol) | 16 | Core business logic and data modeling (ObjectQL) |
 | [UI Protocol](#ui-protocol) | 10 | User interface definitions and interactions (ObjectUI) |
-| [System Protocol](#system-protocol) | 14 | Runtime environment and platform capabilities (ObjectOS) |
-| [AI Protocol](#ai-protocol) | 8 | AI/ML integration and agent orchestration |
-| [API Protocol](#api-protocol) | 6 | Standardized API contracts and communication |
+| [System Protocol](#system-protocol) | 39 | Runtime environment and platform capabilities (ObjectOS) |
+| [AI Protocol](#ai-protocol) | 9 | AI/ML integration and agent orchestration |
+| [API Protocol](#api-protocol) | 13 | Standardized API contracts and communication |
 | [Automation Protocol](#automation-protocol) | 7 | Workflow automation and integration |
 | [Auth Protocol](#auth-protocol) | 6 | Identity, authentication, and authorization |
 | [Permission Protocol](#permission-protocol) | 4 | Access control and security policies |
-| [Hub Protocol](#hub-protocol) | 5 | Marketplace and multi-tenancy |
-| [Shared Protocol](#shared-protocol) | 1 | Common utilities and identifiers |
+| [Hub Protocol](#hub-protocol) | 6 | Marketplace and multi-tenancy |
+| [Integration Protocol](#integration-protocol) | 5 | External system connectors and adapters |
+| [Shared Protocol](#shared-protocol) | 3 | Common utilities and identifiers |
 | [Stack Protocol](#stack-protocol) | 1 | Root stack definition |
 
-**Total: 70 protocols**
+**Total: 109 protocols**
 
 ---
 
 ## Data Protocol (ObjectQL)
 
 **Location:** `packages/spec/src/data/`  
-**Count:** 8 protocols
+**Count:** 16 protocols
 
 Defines the "Shape of Data" and business logic.
 
@@ -44,6 +45,14 @@ Defines the "Shape of Data" and business logic.
 | `dataset.zod.ts` | `DatasetSchema` | Dataset definitions for reporting and analytics |
 | `mapping.zod.ts` | `FieldMappingSchema` | Field mapping configurations for data transformation |
 | `hook.zod.ts` | `HookSchema` | Lifecycle hooks (before/after insert, update, delete) |
+| `data-engine.zod.ts` | `DataEngineSchema` | Data engine configuration and capabilities |
+| `driver.zod.ts` | `DriverSchema` | Generic database driver interface and capabilities |
+| `driver-sql.zod.ts` | `SQLDriverSchema` | SQL-specific driver configuration |
+| `driver-nosql.zod.ts` | `NoSQLDriverSchema` | NoSQL-specific driver configuration |
+| `document.zod.ts` | `DocumentSchema` | Document-oriented data structures |
+| `external-lookup.zod.ts` | `ExternalLookupSchema` | External data source lookup configurations |
+| `driver/postgres.zod.ts` | `PostgresConfigSchema` | PostgreSQL driver configuration |
+| `driver/mongo.zod.ts` | `MongoConfigSchema` | MongoDB driver configuration |
 
 **Key Features:**
 - 44 field types including AI/ML vectors and GPS locations
@@ -88,7 +97,7 @@ Defines the "Shape of Interaction" for rendering interfaces.
 ## System Protocol (ObjectOS)
 
 **Location:** `packages/spec/src/system/`  
-**Count:** 14 protocols
+**Count:** 39 protocols
 
 Defines the "Runtime Environment" and platform capabilities.
 
@@ -96,18 +105,32 @@ Defines the "Runtime Environment" and platform capabilities.
 | :--- | :--- | :--- |
 | `manifest.zod.ts` | `ManifestSchema` | Application/plugin manifest (`objectstack.config.ts`) with 7 package types |
 | `datasource.zod.ts` | `DatasourceSchema` | Data source connection configurations |
-| `driver.zod.ts` | `DriverSchema` | Database driver definitions and options |
-| `driver/postgres.zod.ts` | `PostgresConfigSchema` | PostgreSQL-specific driver configuration |
-| `driver/mongo.zod.ts` | `MongoConfigSchema` | MongoDB-specific driver configuration |
-| `plugin.zod.ts` | `PluginSchema` | Plugin lifecycle and interface definitions |
 | `context.zod.ts` | `KernelContextSchema` | Kernel execution context with user, org, tenant info |
+| `plugin.zod.ts` | `PluginSchema` | Plugin lifecycle and interface definitions |
+| `plugin-capability.zod.ts` | `PluginCapabilitySchema` | Plugin capability declarations |
+| `plugin-lifecycle-events.zod.ts` | `PluginLifecycleEventsSchema` | Plugin lifecycle event definitions |
+| `plugin-validator.zod.ts` | `PluginValidatorSchema` | Plugin validation rules |
+| `startup-orchestrator.zod.ts` | `StartupOrchestratorSchema` | System startup orchestration |
+| `service-registry.zod.ts` | `ServiceRegistrySchema` | Service discovery and registration |
 | `events.zod.ts` | `EventSchema` | Event bus and pub/sub patterns |
 | `job.zod.ts` | `JobSchema` | Background job scheduling (cron, interval, delayed) |
 | `audit.zod.ts` | `AuditEventSchema` | Audit logging for compliance |
-| `logger.zod.ts` | `LoggerConfigSchema` | Structured logging configuration |
+| `logging.zod.ts` | `LoggingSchema` | Structured logging configuration |
+| `metrics.zod.ts` | `MetricsSchema` | Application metrics and monitoring |
+| `tracing.zod.ts` | `TracingSchema` | Distributed tracing configuration |
 | `translation.zod.ts` | `TranslationSchema` | i18n/l10n support |
 | `feature.zod.ts` | `FeatureFlagSchema` | Feature flag definitions |
-| `scoped-storage.zod.ts` | `ScopedStorageSchema` | Scoped key-value storage |
+| `cache.zod.ts` | `CacheSchema` | Caching layer configuration |
+| `object-storage.zod.ts` | `ObjectStorageSchema` | Object storage configuration |
+| `message-queue.zod.ts` | `MessageQueueSchema` | Message queue integration |
+| `search-engine.zod.ts` | `SearchEngineSchema` | Full-text search configuration |
+| `encryption.zod.ts` | `EncryptionSchema` | Encryption and key management |
+| `compliance.zod.ts` | `ComplianceSchema` | Compliance and regulatory controls |
+| `masking.zod.ts` | `MaskingSchema` | Data masking rules |
+| `notification.zod.ts` | `NotificationSchema` | Notification service configuration |
+| `change-management.zod.ts` | `ChangeManagementSchema` | Change tracking and deployment |
+| `collaboration.zod.ts` | `CollaborationSchema` | Real-time collaboration features |
+| `http-server.zod.ts` | `HTTPServerSchema` | HTTP server configuration |
 
 **Package Types:**
 - `app` - Business application package
@@ -125,13 +148,14 @@ Defines the "Runtime Environment" and platform capabilities.
 ## AI Protocol
 
 **Location:** `packages/spec/src/ai/`  
-**Count:** 8 protocols
+**Count:** 9 protocols
 
 Defines AI agent integration capabilities.
 
 | File | Schema | Purpose |
 | :--- | :--- | :--- |
 | `agent.zod.ts` | `AgentSchema` | AI agent definitions and configurations |
+| `agent-action.zod.ts` | `AgentActionSchema` | Actions that agents can perform |
 | `model-registry.zod.ts` | `ModelRegistrySchema` | LLM registry and selection |
 | `rag-pipeline.zod.ts` | `RAGPipelineSchema` | Retrieval-augmented generation |
 | `nlq.zod.ts` | `NLQSchema` | Natural language query processing (NL to ObjectQL) |
@@ -147,7 +171,7 @@ Defines AI agent integration capabilities.
 ## API Protocol
 
 **Location:** `packages/spec/src/api/`  
-**Count:** 6 protocols
+**Count:** 13 protocols
 
 Defines standardized API contracts.
 
@@ -157,13 +181,81 @@ Defines standardized API contracts.
 | `endpoint.zod.ts` | `EndpointSchema` | REST endpoint definitions with rate limiting |
 | `router.zod.ts` | `RouterSchema` | API routing configuration |
 | `odata.zod.ts` | `ODataSchema` | OData query protocol support |
+| `graphql.zod.ts` | `GraphQLSchema` | GraphQL API configuration |
 | `realtime.zod.ts` | `RealtimeSchema` | WebSocket/SSE real-time subscriptions |
+| `websocket.zod.ts` | `WebSocketSchema` | WebSocket protocol configuration |
 | `discovery.zod.ts` | `DiscoverySchema` | API discovery and introspection |
+| `batch.zod.ts` | `BatchSchema` | Batch API request processing |
+| `http-cache.zod.ts` | `HTTPCacheSchema` | HTTP caching strategies |
+| `errors.zod.ts` | `ErrorSchema` | Standardized error responses |
+| `view-storage.zod.ts` | `ViewStorageSchema` | View state persistence |
+| `protocol.zod.ts` | `ProtocolSchema` | API protocol definitions |
+| `rest-server.zod.ts` | `RESTServerSchema` | REST server configuration |
 
 **Learn more:** [API Protocol Reference](/docs/references/api)
 
 ---
 
+## Automation Protocol
+
+**Location:** `packages/spec/src/automation/`  
+**Count:** 7 protocols
+
+Defines workflow automation and business process management.
+
+| File | Schema | Purpose |
+| :--- | :--- | :--- |
+| `workflow.zod.ts` | `WorkflowSchema` | State machine and approval processes |
+| `flow.zod.ts` | `FlowSchema` | Visual logic orchestration (autolaunched, screen, schedule) |
+| `approval.zod.ts` | `ApprovalSchema` | Approval process configuration |
+| `webhook.zod.ts` | `WebhookSchema` | Webhook definitions and handlers |
+| `etl.zod.ts` | `ETLSchema` | Extract, transform, load pipelines |
+| `trigger-registry.zod.ts` | `TriggerRegistrySchema` | Event-driven automation triggers |
+| `sync.zod.ts` | `SyncSchema` | Data synchronization configurations |
+
+**Learn more:** [Automation Protocol Reference](/docs/references/automation)
+
+---
+
+## Hub Protocol
+
+**Location:** `packages/spec/src/hub/`  
+**Count:** 6 protocols
+
+Defines marketplace and multi-tenancy capabilities.
+
+| File | Schema | Purpose |
+| :--- | :--- | :--- |
+| `marketplace.zod.ts` | `MarketplaceSchema` | Plugin marketplace configuration |
+| `plugin-registry.zod.ts` | `PluginRegistrySchema` | Plugin registry and versioning |
+| `composer.zod.ts` | `ComposerSchema` | Application composition tools |
+| `space.zod.ts` | `SpaceSchema` | Workspace and environment management |
+| `tenant.zod.ts` | `TenantSchema` | Multi-tenancy configuration |
+| `license.zod.ts` | `LicenseSchema` | Licensing and entitlement management |
+
+**Learn more:** [Hub Protocol Reference](/docs/references/hub)
+
+---
+
+## Integration Protocol
+
+**Location:** `packages/spec/src/integration/`  
+**Count:** 5 protocols
+
+Defines external system connectors and adapters.
+
+| File | Schema | Purpose |
+| :--- | :--- | :--- |
+| `connector.zod.ts` | `ConnectorSchema` | Generic connector interface |
+| `connector/saas.zod.ts` | `SaaSConnectorSchema` | SaaS platform connectors (Salesforce, HubSpot, etc.) |
+| `connector/database.zod.ts` | `DatabaseConnectorSchema` | Database connection adapters |
+| `connector/file-storage.zod.ts` | `FileStorageConnectorSchema` | Cloud storage connectors (S3, Azure Blob, etc.) |
+| `connector/message-queue.zod.ts` | `MessageQueueConnectorSchema` | Message queue integrations (RabbitMQ, Kafka, etc.) |
+
+**Learn more:** [Integration Protocol Reference](/docs/references/integration)
+
+---
+
 ## Recent Additions (2026-01-27)
 
 **ObjectQL Advanced Features:**
diff --git a/content/docs/references/meta.json b/content/docs/references/meta.json
index 577f212af..154d7fd6a 100644
--- a/content/docs/references/meta.json
+++ b/content/docs/references/meta.json
@@ -1,6 +1,7 @@
 {
   "title": "Protocol Reference",
   "pages": [
+    "packages",
     "data",
     "ui",
     "automation",
@@ -8,6 +9,10 @@
     "permission",
     "ai",
     "api",
-    "driver"
+    "driver",
+    "hub",
+    "integration",
+    "auth",
+    "shared"
   ]
 }
\ No newline at end of file
diff --git a/content/docs/references/packages.mdx b/content/docs/references/packages.mdx
new file mode 100644
index 000000000..83ef743d7
--- /dev/null
+++ b/content/docs/references/packages.mdx
@@ -0,0 +1,349 @@
+---
+title: Package Reference
+description: Complete reference of all ObjectStack packages in the monorepo
+---
+
+# Package Reference
+
+ObjectStack is distributed as a monorepo containing **12 packages** organized into core packages and plugins.
+
+## Package Overview
+
+| Category | Count | Description |
+| :--- | :---: | :--- |
+| [Core Packages](#core-packages) | 9 | Essential runtime, protocols, and client SDKs |
+| [Plugin Packages](#plugin-packages) | 3 | Drivers and adapters for extending ObjectStack |
+
+**Total: 12 packages**
+
+---
+
+## Core Packages
+
+### @objectstack/spec
+
+**Description:** ObjectStack Protocol & Specification - TypeScript Interfaces, JSON Schemas, and Convention Configurations
+
+**Purpose:** The foundational package containing all protocol definitions and schemas. This is the "DNA" of ObjectStack.
+
+**Key Exports:**
+- `Data` - Data protocol schemas (Field, Object, Query, etc.)
+- `UI` - UI protocol schemas (View, App, Dashboard, etc.)
+- `System` - System protocol schemas (Manifest, Plugin, Events, etc.)
+- `AI` - AI protocol schemas (Agent, RAG Pipeline, etc.)
+- `API` - API protocol schemas (Contract, Endpoint, etc.)
+- `Automation` - Automation protocol schemas (Flow, Workflow, etc.)
+- `Auth` - Authentication protocol schemas
+- `Permission` - Permission protocol schemas
+- `Hub` - Hub protocol schemas
+- `Integration` - Integration protocol schemas
+- `Shared` - Shared utilities and identifiers
+
+**Protocol Count:** 109 Zod schemas
+
+**Learn more:** [Protocol Reference](/docs/references)
+
+---
+
+### @objectstack/core
+
+**Description:** Microkernel Core for ObjectStack
+
+**Purpose:** Provides the runtime foundation for ObjectStack, including the plugin system, service registry, and logging infrastructure.
+
+**Key Features:**
+- Plugin lifecycle management
+- Service registry for dependency injection
+- Structured logging system
+- Event bus for inter-plugin communication
+- Startup orchestration
+
+**Use Cases:**
+- Building custom ObjectStack runtimes
+- Creating plugin-based architectures
+- Implementing microkernel patterns
+
+---
+
+### @objectstack/runtime
+
+**Description:** ObjectStack Core Runtime & Query Engine
+
+**Purpose:** The main runtime engine that executes ObjectQL queries and manages data operations.
+
+**Key Features:**
+- Query execution engine
+- Data operation handlers (CRUD)
+- Runtime context management
+- Transaction support
+- Driver orchestration
+
+**Use Cases:**
+- Running ObjectStack applications
+- Executing data queries
+- Managing database operations
+
+---
+
+### @objectstack/objectql
+
+**Description:** Isomorphic ObjectQL Engine for ObjectStack
+
+**Purpose:** Standalone ObjectQL query engine that can run in any JavaScript environment (Node.js, browsers, edge).
+
+**Key Features:**
+- Isomorphic query execution (client and server)
+- ObjectQL AST parsing and compilation
+- Query optimization
+- Driver-agnostic query interface
+
+**Use Cases:**
+- Client-side data querying
+- Edge function data access
+- Serverless query execution
+
+---
+
+### @objectstack/client
+
+**Description:** Official Client SDK for ObjectStack Protocol
+
+**Purpose:** Type-safe client library for interacting with ObjectStack APIs.
+
+**Key Features:**
+- Type-safe API methods
+- Query builder interface
+- Authentication handling
+- Request/response transformation
+- Error handling
+
+**Use Cases:**
+- Building frontend applications
+- Consuming ObjectStack APIs
+- Type-safe data fetching
+
+---
+
+### @objectstack/client-react
+
+**Description:** React hooks for ObjectStack Client SDK
+
+**Purpose:** React-specific hooks and components for ObjectStack integration.
+
+**Requirements:** React 18+
+
+**Key Features:**
+- `useQuery` - Data fetching hook
+- `useMutation` - Data mutation hook
+- `useObject` - Object metadata hook
+- React Query integration
+- Optimistic updates
+
+**Use Cases:**
+- Building React applications
+- Real-time data synchronization
+- Form handling with ObjectStack data
+
+---
+
+### @objectstack/cli
+
+**Description:** Command Line Interface for ObjectStack Protocol
+
+**Purpose:** Developer tools for scaffolding, building, and managing ObjectStack applications.
+
+**Commands:**
+- `os init` / `objectstack init` - Initialize new project
+- `os build` / `objectstack build` - Build and validate metadata
+- `os dev` / `objectstack dev` - Development server
+- `os generate` - Code generation from schemas
+
+**Use Cases:**
+- Project scaffolding
+- Metadata validation
+- Development workflows
+- Code generation
+
+---
+
+### @objectstack/ai-bridge
+
+**Description:** AI/ML integration bridge for ObjectStack
+
+**Purpose:** Provides adapters and utilities for integrating AI/ML models with ObjectStack.
+
+**Key Features:**
+- LLM provider adapters (OpenAI, Anthropic, etc.)
+- Model registry and routing
+- Token usage tracking
+- Embedding generation
+- RAG pipeline support
+
+**Use Cases:**
+- Building AI-powered applications
+- Integrating LLMs with business data
+- Implementing RAG workflows
+
+---
+
+### @objectstack/types
+
+**Description:** Shared interfaces describing the ObjectStack Runtime environment
+
+**Purpose:** Common TypeScript type definitions used across all ObjectStack packages.
+
+**Key Exports:**
+- `IKernel` - Kernel interface
+- `RuntimePlugin` - Plugin interface
+- Shared utility types
+- Runtime context types
+
+**Use Cases:**
+- Plugin development
+- Type-safe integrations
+- Extending ObjectStack core
+
+---
+
+## Plugin Packages
+
+### @objectstack/driver-memory
+
+**Description:** In-Memory Driver for ObjectStack (Reference Implementation)
+
+**Purpose:** A fully functional in-memory database driver used for testing and development.
+
+**Key Features:**
+- Full ObjectQL support
+- Transaction support
+- Query execution
+- No external dependencies
+
+**Use Cases:**
+- Testing ObjectStack applications
+- Development without database setup
+- Understanding driver implementation patterns
+
+**Status:** Reference implementation for driver developers
+
+---
+
+### @objectstack/plugin-hono-server
+
+**Description:** Standard Hono Server Adapter for ObjectStack Runtime
+
+**Purpose:** HTTP server adapter using the Hono framework.
+
+**Key Features:**
+- Fast HTTP server using Hono
+- REST API endpoints
+- Middleware support
+- Edge runtime compatible
+
+**Use Cases:**
+- Production REST API deployment
+- Edge function hosting
+- Serverless deployments
+
+---
+
+### @objectstack/plugin-msw
+
+**Description:** MSW (Mock Service Worker) Plugin for ObjectStack Runtime
+
+**Purpose:** Testing plugin for mocking ObjectStack APIs in tests.
+
+**Key Features:**
+- API mocking for tests
+- Request interception
+- Response simulation
+- Integration with MSW
+
+**Use Cases:**
+- Unit testing
+- Integration testing
+- Frontend testing without backend
+
+---
+
+## Package Dependencies
+
+### Dependency Graph
+
+```
+@objectstack/spec (no dependencies)
+    ↓
+    ├─→ @objectstack/types
+    ├─→ @objectstack/core
+    ├─→ @objectstack/objectql
+    ├─→ @objectstack/runtime
+    │       ↓
+    │       └─→ @objectstack/client
+    │               ↓
+    │               └─→ @objectstack/client-react
+    ├─→ @objectstack/cli
+    └─→ @objectstack/ai-bridge
+
+Plugins (depend on core packages):
+    ├─→ @objectstack/driver-memory
+    ├─→ @objectstack/plugin-hono-server
+    └─→ @objectstack/plugin-msw
+```
+
+### Installation
+
+**For Application Development:**
+```bash
+pnpm add @objectstack/runtime @objectstack/client
+```
+
+**For React Applications:**
+```bash
+pnpm add @objectstack/client-react
+```
+
+**For Plugin Development:**
+```bash
+pnpm add @objectstack/core @objectstack/spec
+```
+
+**For CLI Tools:**
+```bash
+pnpm add -g @objectstack/cli
+```
+
+---
+
+## Version Compatibility
+
+All packages in the monorepo are versioned together and released simultaneously to ensure compatibility.
+
+**Current Version:** Check [CHANGELOG.md](https://github.com/objectstack-ai/spec/blob/main/CHANGELOG.md)
+
+**Compatibility Matrix:**
+
+| Package Version | Node.js | TypeScript | React (for client-react) |
+| :--- | :--- | :--- | :--- |
+| 0.6.x | ≥18.0.0 | ≥5.3.0 | ≥18.0.0 |
+
+---
+
+## Next Steps
+
+<Cards>
+  <Card 
+    href="/docs/references" 
+    title="Protocol Reference"
+    description="Explore the 109 protocol schemas"
+  />
+  <Card 
+    href="/docs/developers" 
+    title="Developer Guide"
+    description="Build with ObjectStack packages"
+  />
+  <Card 
+    href="https://github.com/objectstack-ai/spec" 
+    title="GitHub Repository"
+    description="View source code and contribute"
+  />
+</Cards>
diff --git a/content/docs/references/protocol-map.mdx b/content/docs/references/protocol-map.mdx
index e786a6354..a69370d75 100644
--- a/content/docs/references/protocol-map.mdx
+++ b/content/docs/references/protocol-map.mdx
@@ -6,7 +6,7 @@ description: Visual guide to ObjectStack protocol relationships and dependencies
 
 # Protocol Architecture Map
 
-Understand how the 70 ObjectStack protocols fit together to form a complete business platform.
+Understand how the 109 ObjectStack protocols fit together to form a complete business platform.
 
 ## The Three-Layer Architecture
 
@@ -34,7 +34,7 @@ Understand how the 70 ObjectStack protocols fit together to form a complete busi
                              │
                     ┌────────▼────────┐
                     │ ObjectQL (Data) │
-                    │   8 Protocols   │
+                    │   16 Protocols  │
                     └────────┬────────┘
                              │
 ┌────────────────────────────┴─────────────────────────────────────┐
@@ -47,7 +47,7 @@ Understand how the 70 ObjectStack protocols fit together to form a complete busi
                              │
                     ┌────────▼────────┐
                     │  ObjectOS (Sys) │
-                    │  40+ Protocols  │
+                    │  39 Protocols   │
                     └─────────────────┘
 ```
 
diff --git a/content/docs/references/quick-reference.mdx b/content/docs/references/quick-reference.mdx
index 48f8dcd86..22f032610 100644
--- a/content/docs/references/quick-reference.mdx
+++ b/content/docs/references/quick-reference.mdx
@@ -6,13 +6,13 @@ description: Fast lookup table for all ObjectStack protocols
 
 # Quick Reference Guide
 
-Fast lookup for all 70 ObjectStack protocols organized by category.
+Fast lookup for all 109 ObjectStack protocols organized by category.
 
 <Callout type="info">
 Click on any protocol name to view its complete API reference.
 </Callout>
 
-## Data Protocol (8 protocols)
+## Data Protocol (16 protocols)
 
 Core business logic and data modeling schemas.
 
@@ -26,6 +26,14 @@ Core business logic and data modeling schemas.
 | **[Dataset](./data/dataset)** | `dataset.zod.ts` | Dataset, DatasetMode | Reusable dataset definitions |
 | **[Mapping](./data/mapping)** | `mapping.zod.ts` | FieldMapping | Field transformation mappings |
 | **[Hook](./data/hook)** | `hook.zod.ts` | Hook, HookEvent | Lifecycle event hooks |
+| **[Data Engine](./data/data-engine)** | `data-engine.zod.ts` | DataEngine | Data engine configuration |
+| **[Driver](./data/driver)** | `driver.zod.ts` | Driver, DriverCapabilities | Database driver interface |
+| **[SQL Driver](./data/driver-sql)** | `driver-sql.zod.ts` | SQLDriver | SQL-specific driver |
+| **[NoSQL Driver](./data/driver-nosql)** | `driver-nosql.zod.ts` | NoSQLDriver | NoSQL-specific driver |
+| **[Document](./data/document)** | `document.zod.ts` | Document | Document-oriented data |
+| **[External Lookup](./data/external-lookup)** | `external-lookup.zod.ts` | ExternalLookup | External data lookups |
+| **[Postgres Driver](./driver/postgres)** | `driver/postgres.zod.ts` | PostgresConfig | PostgreSQL configuration |
+| **[Mongo Driver](./driver/mongo)** | `driver/mongo.zod.ts` | MongoConfig | MongoDB configuration |
 
 ## UI Protocol (10 protocols)
 
@@ -58,7 +66,7 @@ Workflows, flows, and integrations.
 | **[Sync](./automation/sync)** | `sync.zod.ts` | SyncConfig | Bi-directional data sync |
 | **[Connector](./automation/connector)** | `connector.zod.ts` | Connector, ConnectorType | External system connectors |
 
-## System Protocol (14 protocols)
+## System Protocol (39 protocols)
 
 Core system configuration and runtime infrastructure.
 
@@ -66,20 +74,34 @@ Core system configuration and runtime infrastructure.
 |:---------|:-----------|:------------|:--------|
 | **[Manifest](./system/manifest)** | `manifest.zod.ts` | Manifest | Package manifest (objectstack.config.ts) |
 | **[Datasource](./system/datasource)** | `datasource.zod.ts` | Datasource, DatasourceType | Database connection configs |
-| **[Driver](./system/driver)** | `driver.zod.ts` | Driver, DriverCapabilities | Database driver interface |
-| **[Plugin](./system/plugin)** | `plugin.zod.ts` | Plugin, PluginHook | Plugin system interface |
 | **[Context](./system/context)** | `context.zod.ts` | KernelContext | Runtime execution context |
+| **[Plugin](./system/plugin)** | `plugin.zod.ts` | Plugin, PluginHook | Plugin system interface |
+| **[Plugin Capability](./system/plugin-capability)** | `plugin-capability.zod.ts` | PluginCapability | Plugin capability declarations |
+| **[Plugin Lifecycle](./system/plugin-lifecycle-events)** | `plugin-lifecycle-events.zod.ts` | PluginLifecycleEvents | Plugin lifecycle events |
+| **[Plugin Validator](./system/plugin-validator)** | `plugin-validator.zod.ts` | PluginValidator | Plugin validation |
+| **[Startup Orchestrator](./system/startup-orchestrator)** | `startup-orchestrator.zod.ts` | StartupOrchestrator | System startup |
+| **[Service Registry](./system/service-registry)** | `service-registry.zod.ts` | ServiceRegistry | Service discovery |
 | **[Events](./system/events)** | `events.zod.ts` | Event, EventBus | System event bus |
 | **[Job](./system/job)** | `job.zod.ts` | Job, JobSchedule | Background job queue |
 | **[Audit](./system/audit)** | `audit.zod.ts` | AuditLog, AuditEvent | Audit trail logging |
-| **[Logger](./system/logger)** | `logger.zod.ts` | LoggerConfig | Logging configuration |
+| **[Logging](./system/logging)** | `logging.zod.ts` | LoggingConfig | Structured logging |
+| **[Metrics](./system/metrics)** | `metrics.zod.ts` | Metrics | Application metrics |
+| **[Tracing](./system/tracing)** | `tracing.zod.ts` | Tracing | Distributed tracing |
 | **[Translation](./system/translation)** | `translation.zod.ts` | Translation | i18n support |
 | **[Feature](./system/feature)** | `feature.zod.ts` | FeatureFlag | Feature flags |
-| **[Storage](./system/scoped-storage)** | `scoped-storage.zod.ts` | ScopedStorage | Key-value storage |
-| **[Postgres Config](./system/misc)** | `postgres.zod.ts` | PostgresConfig | PostgreSQL driver config |
-| **[Mongo Config](./system/misc)** | `mongo.zod.ts` | MongoConfig | MongoDB driver config |
-
-## AI Protocol (8 protocols)
+| **[Cache](./system/cache)** | `cache.zod.ts` | CacheConfig | Caching layer |
+| **[Object Storage](./system/object-storage)** | `object-storage.zod.ts` | ObjectStorage | Object storage |
+| **[Message Queue](./system/message-queue)** | `message-queue.zod.ts` | MessageQueue | Message queuing |
+| **[Search Engine](./system/search-engine)** | `search-engine.zod.ts` | SearchEngine | Full-text search |
+| **[Encryption](./system/encryption)** | `encryption.zod.ts` | Encryption | Encryption & keys |
+| **[Compliance](./system/compliance)** | `compliance.zod.ts` | Compliance | Regulatory controls |
+| **[Masking](./system/masking)** | `masking.zod.ts` | Masking | Data masking |
+| **[Notification](./system/notification)** | `notification.zod.ts` | Notification | Notifications |
+| **[Change Management](./system/change-management)** | `change-management.zod.ts` | ChangeManagement | Change tracking |
+| **[Collaboration](./system/collaboration)** | `collaboration.zod.ts` | Collaboration | Real-time collab |
+| **[HTTP Server](./system/http-server)** | `http-server.zod.ts` | HTTPServer | HTTP server config |
+
+## AI Protocol (9 protocols)
 
 AI/ML capabilities - agents, models, RAG, and cost tracking.
 
@@ -90,11 +112,12 @@ AI/ML capabilities - agents, models, RAG, and cost tracking.
 | **[RAG Pipeline](./ai/rag-pipeline)** | `rag-pipeline.zod.ts` | RAGPipelineConfig | Retrieval augmented generation |
 | **[NLQ](./ai/nlq)** | `nlq.zod.ts` | NLQRequest, NLQResponse | Natural language to query |
 | **[Conversation](./ai/conversation)** | `conversation.zod.ts` | ConversationSession | Conversation management |
+| **[Agent Action](./ai/agent-action)** | `agent-action.zod.ts` | AgentAction | Agent action definitions |
 | **[Cost](./ai/cost)** | `cost.zod.ts` | CostEntry, BudgetLimit | AI cost tracking and budgets |
 | **[Predictive](./ai/predictive)** | `predictive.zod.ts` | PredictiveModel | Predictive ML models |
 | **[Orchestration](./ai/orchestration)** | `orchestration.zod.ts` | AIOrchestration | Multi-agent orchestration |
 
-## API Protocol (6 protocols)
+## API Protocol (13 protocols)
 
 REST/GraphQL endpoints and real-time subscriptions.
 
@@ -104,8 +127,16 @@ REST/GraphQL endpoints and real-time subscriptions.
 | **[Endpoint](./api/endpoint)** | `endpoint.zod.ts` | Endpoint, EndpointMethod | REST endpoint configuration |
 | **[Router](./api/router)** | `router.zod.ts` | Router, Route | API routing rules |
 | **[OData](./api/odata)** | `odata.zod.ts` | ODataQuery | OData protocol support |
+| **[GraphQL](./api/graphql)** | `graphql.zod.ts` | GraphQLSchema | GraphQL API config |
 | **[Realtime](./api/realtime)** | `realtime.zod.ts` | Subscription, Channel | WebSocket subscriptions |
+| **[WebSocket](./api/websocket)** | `websocket.zod.ts` | WebSocketConfig | WebSocket protocol |
 | **[Discovery](./api/discovery)** | `discovery.zod.ts` | ServiceDiscovery | API discovery and metadata |
+| **[Batch](./api/batch)** | `batch.zod.ts` | BatchRequest | Batch API processing |
+| **[HTTP Cache](./api/http-cache)** | `http-cache.zod.ts` | CacheStrategy | HTTP caching |
+| **[Errors](./api/errors)** | `errors.zod.ts` | ErrorResponse | Error responses |
+| **[View Storage](./api/view-storage)** | `view-storage.zod.ts` | ViewStorage | View state storage |
+| **[Protocol](./api/protocol)** | `protocol.zod.ts` | ProtocolDefinition | Protocol definitions |
+| **[REST Server](./api/rest-server)** | `rest-server.zod.ts` | RESTServer | REST server config |
 
 ## Auth Protocol (6 protocols)
 
@@ -131,18 +162,51 @@ Access control and row-level security.
 | **[RLS](./permission/rls)** | `rls.zod.ts` | RowLevelSecurity | Row-level security filters |
 | **[Territory](./permission/territory)** | `territory.zod.ts` | Territory | Territory-based access |
 
-## Hub Protocol (5 protocols)
+## Hub Protocol (6 protocols)
 
 Marketplace, licensing, and multi-tenancy.
 
 | Protocol | Source File | Key Schemas | Purpose |
 |:---------|:-----------|:------------|:--------|
 | **[Marketplace](./hub/marketplace)** | `marketplace.zod.ts` | Package, PackageVersion | Plugin marketplace |
+| **[Plugin Registry](./hub/plugin-registry)** | `plugin-registry.zod.ts` | PluginRegistry | Plugin versioning |
 | **[Composer](./hub/composer)** | `composer.zod.ts` | Dependency | Dependency management |
 | **[License](./hub/license)** | `license.zod.ts` | License, LicenseType | Feature licensing |
 | **[Tenant](./hub/tenant)** | `tenant.zod.ts` | Tenant | Multi-tenancy isolation |
 | **[Space](./hub/space)** | `space.zod.ts` | Space, Workspace | Workspace management |
 
+## Integration Protocol (5 protocols)
+
+External system connectors and adapters.
+
+| Protocol | Source File | Key Schemas | Purpose |
+|:---------|:-----------|:------------|:--------|
+| **[Connector](./integration/connector)** | `connector.zod.ts` | Connector | Generic connector interface |
+| **[SaaS Connector](./integration/connector)** | `connector/saas.zod.ts` | SaaSConnector | SaaS integrations |
+| **[Database Connector](./integration/connector)** | `connector/database.zod.ts` | DatabaseConnector | Database adapters |
+| **[File Storage](./integration/connector)** | `connector/file-storage.zod.ts` | FileStorageConnector | Cloud storage |
+| **[Message Queue](./integration/connector)** | `connector/message-queue.zod.ts` | MessageQueueConnector | Queue integrations |
+
+## Shared Protocol (3 protocols)
+
+Common utilities used across all protocols.
+
+| Protocol | Source File | Key Schemas | Purpose |
+|:---------|:-----------|:------------|:--------|
+| **[Identifiers](./shared/identifiers)** | `identifiers.zod.ts` | ID formats | Standard ID patterns |
+| **[HTTP](./shared/http)** | `http.zod.ts` | HTTPRequest, HTTPResponse | HTTP utilities |
+| **[Mapping](./shared/mapping)** | `mapping.zod.ts` | MappingRule | Field mapping utilities |
+
+## Stack Protocol (1 protocol)
+
+Root stack definition.
+
+| Protocol | Source File | Key Schemas | Purpose |
+|:---------|:-----------|:------------|:--------|
+| **[Stack](../stack.zod.ts)** | `stack.zod.ts` | Stack, StackConfig | ObjectStack root definition |
+
+---
+
 ## Common Patterns
 
 ### Naming Conventions