deploy: 9239ebe

Author: simongravelle

sphinx/build/doctrees/environment.pickle

@@ -90,9 +90,13 @@ distances, etc).  Thus add to **water.lmp** the line:
     maps are used for the bond types, angle types, and dihedral types.
 
 Let us create water molecules.  To do so, let us import a molecule template called
-**water.mol** and then randomly create 700 molecules.  Add the following
+|water_mol_tutorial3| and then randomly create 700 molecules.  Add the following
 lines into **water.lmp**:
 
+.. |water_mol_tutorial3| raw:: html
+
+    <a href="https://raw.githubusercontent.com/lammpstutorials/lammpstutorials-inputs/refs/heads/main/tutorial3/water.mol" target="_blank">water.mol</a>
+
 .. code-block:: lammps
 
     molecule h2omol water.mol

sphinx/build/doctrees/tutorial3/polymer-in-water.doctree

@@ -395,7 +395,7 @@ <h2>Preparing the water reservoir<a class="headerlink" href="#preparing-the-wate
 maps are used for the bond types, angle types, and dihedral types.</p>
 </div>
 <p>Let us create water molecules.  To do so, let us import a molecule template called
-<strong>water.mol</strong> and then randomly create 700 molecules.  Add the following
+<a href="https://raw.githubusercontent.com/lammpstutorials/lammpstutorials-inputs/refs/heads/main/tutorial3/water.mol" target="_blank">water.mol</a> and then randomly create 700 molecules.  Add the following
 lines into <strong>water.lmp</strong>:</p>
 <div class="highlight-lammps notranslate"><div class="highlight"><pre><span></span><span class="k">molecule</span><span class="w"> </span><span class="n">h2omol</span><span class="w"> </span><span class="n">water.mol</span>
 <span class="k">create_atoms</span><span class="w"> </span><span class="m">0</span><span class="w"> </span><span class="n">random</span><span class="w"> </span><span class="m">700</span><span class="w"> </span><span class="m">87910</span><span class="w"> </span><span class="n">NULL</span><span class="w"> </span><span class="n">mol</span><span class="w"> </span><span class="n">h2omol</span><span class="w"> </span><span class="m">454756</span><span class="w"> </span><span class="n">overlap</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="n">maxtry</span><span class="w"> </span><span class="m">50</span>

sphinx/build/doctrees/tutorial3/tutorial.doctree

@@ -347,7 +347,7 @@ <h1>Preparing the water reservoir<a class="headerlink" href="#preparing-the-wate
 maps are used for the bond types, angle types, and dihedral types.</p>
 </div>
 <p>Let us create water molecules.  To do so, let us import a molecule template called
-<strong>water.mol</strong> and then randomly create 700 molecules.  Add the following
+<a href="https://raw.githubusercontent.com/lammpstutorials/lammpstutorials-inputs/refs/heads/main/tutorial3/water.mol" target="_blank">water.mol</a> and then randomly create 700 molecules.  Add the following
 lines into <strong>water.lmp</strong>:</p>
 <div class="highlight-lammps notranslate"><div class="highlight"><pre><span></span><span class="k">molecule</span><span class="w"> </span><span class="n">h2omol</span><span class="w"> </span><span class="n">water.mol</span>
 <span class="k">create_atoms</span><span class="w"> </span><span class="m">0</span><span class="w"> </span><span class="n">random</span><span class="w"> </span><span class="m">700</span><span class="w"> </span><span class="m">87910</span><span class="w"> </span><span class="n">NULL</span><span class="w"> </span><span class="n">mol</span><span class="w"> </span><span class="n">h2omol</span><span class="w"> </span><span class="m">454756</span><span class="w"> </span><span class="n">overlap</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="n">maxtry</span><span class="w"> </span><span class="m">50</span>

sphinx/build/html/_sources/tutorial3/tutorial.rst.txt

@@ -90,9 +90,13 @@ distances, etc).  Thus add to **water.lmp** the line:
     maps are used for the bond types, angle types, and dihedral types.
 
 Let us create water molecules.  To do so, let us import a molecule template called
-**water.mol** and then randomly create 700 molecules.  Add the following
+|water_mol_tutorial3| and then randomly create 700 molecules.  Add the following
 lines into **water.lmp**:
 
+.. |water_mol_tutorial3| raw:: html
+
+    <a href="https://raw.githubusercontent.com/lammpstutorials/lammpstutorials-inputs/refs/heads/main/tutorial3/water.mol" target="_blank">water.mol</a>
+
 .. code-block:: lammps
 
     molecule h2omol water.mol