When plotting:
./dotplot.py --fasta 1.fa 2.fa --gui
and
./dotplot.py --fasta 1.fa 2.fa --window_size 10 --gui
in both cases we really consider all residues/nucleotides etc, so full sequence should be shown in both cases. In the second case, the sequence is trimmed to the dimensions of plotted matrix, which shouldn't be the case.
When plotting:
and
in both cases we really consider all residues/nucleotides etc, so full sequence should be shown in both cases. In the second case, the sequence is trimmed to the dimensions of plotted matrix, which shouldn't be the case.