Merge pull request #73 from lguerard/issues/32

Fix path with BDV test

Author: ehrenfeu

tests/bdv/test_define_dataset_auto.py

@@ -6,9 +6,7 @@
 from imcflibs.imagej import bdv
 
 
-def set_default_values(
-    project_filename, file_path, series_type="Tiles"
-):
+def set_default_values(project_filename, file_path, series_type="Tiles"):
     """Set the default values for dataset definitions.
 
     Parameters
@@ -35,7 +33,7 @@ def set_default_values(
         + ".xml"
         + "] "
         + "path=["
-        + file_info["path"]
+        + file_info["full"]
         + "] "
         + "exclude=10 "
         + "bioformats_series_are?="
@@ -80,7 +78,7 @@ def test_define_dataset_auto_tile(tmp_path, caplog):
     cmd = "Define Multi-View Dataset"
 
     # Set the default values for dataset definitions
-    options = set_default_values(project_filename, file_path)
+    options = set_default_values(project_filename, file_info["path"])
 
     # Construct the options for dataset definitions
     options = (
@@ -106,9 +104,7 @@ def test_define_dataset_auto_tile(tmp_path, caplog):
     final_call = "IJ.run(cmd=[%s], params=[%s])" % (cmd, options)
 
     # Define the dataset using the "Auto-Loader" option
-    bdv.define_dataset_auto(
-        project_filename, file_info["path"], bf_series_type
-    )
+    bdv.define_dataset_auto(project_filename, file_info["path"], bf_series_type)
     # Check if the final call is in the log
     assert final_call == caplog.messages[0]
 
@@ -146,9 +142,7 @@ def test_define_dataset_auto_angle(tmp_path, caplog):
     cmd = "Define Multi-View Dataset"
 
     # Set the default values for dataset definitions
-    options = set_default_values(
-        project_filename, file_path, bf_series_type
-    )
+    options = set_default_values(project_filename, file_info["path"], bf_series_type)
 
     # Construct the options for dataset definitions
     options = (
@@ -175,8 +169,6 @@ def test_define_dataset_auto_angle(tmp_path, caplog):
     final_call = "IJ.run(cmd=[%s], params=[%s])" % (cmd, options)
 
     # Define the dataset using the "Auto-Loader" option
-    bdv.define_dataset_auto(
-        project_filename, file_info["path"], bf_series_type
-    )
+    bdv.define_dataset_auto(project_filename, file_info["path"], bf_series_type)
     # Check if the final call is in the log
     assert final_call == caplog.messages[0]