@@ -296,16 +296,16 @@ selected directory and plot resulting :math:`R_w` values from each morph.
296296 `PDFgui <https://www.diffpy.org/products/pdfgui.html >`_.
297297
2982988. Finally, let us save all the morphed PDFs into a directory
299- named ``savedMorphs ``. ::
299+ named ``saved-morphs ``. ::
300300
301301 pdfmorph SrFe2As2_150K.gr . --scale=1 --stretch=0 --multiple-targets \
302- --sort-by=temperature --plot-parameter=stretch \
303- --save=savedMorphs
302+ --sort-by=temperature --plot-parameter=stretch \
303+ --save=saved-morphs
304304
305305 Entering the directory with ``cd `` and viewing its contents with
306- ``ls ``, we see a file named ``Morph_Reference_Table .txt `` with data
306+ ``ls ``, we see a file named ``morph_reference_table .txt `` with data
307307 about the input morph parameters and re- fined output parameters
308- and a directory named ``Morphs `` containing all the morphed
308+ and a directory named ``morphs `` containing all the morphed
309309 PDFs. See the ``--save-names-file `` option to see how you can set
310310 the names for these saved morphs!
311311
@@ -321,7 +321,8 @@ include: spheres and spheroids.
321321 ``morphShape `` subdirectory. Inside, you will find a sample Ni bulk
322322 material PDF ``Ni_bulk.gr ``. This PDF is from `"Atomic Pair
323323 Distribution Function Analysis:
324- A primer" <https://github.com/Billingegroup/pdfttp_data/> `_.
324+ A primer" <https://global.oup.com/academic/product/
325+ atomic-pair-distribution-function-analysis-9780198885801> `_.
325326 There are also multiple ``.cgr `` files with calculated Ni nanoparticle PDFs.
326327
327328* Let us apply various shape effect morphs on the bulk material to
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