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doc/manual/source/quickstart.rst

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@@ -203,23 +203,23 @@ selected directory and plot resulting :math:`R_w` values from each morph.
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2. Let us start by getting the Rw of ``SrFe2As2_150K.gr`` compared to all other files in the
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directory. Run ::
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pdfmorph SrFe2As2_150K.gr . --sequence
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pdfmorph SrFe2As2_150K.gr . --multiple
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The sequence tag indicates we are comparing PDF file (first input) against all PDFs in
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a directory (second input). Our choice of file was ``SeFe2As2_150K.gr``
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and directory was the cwd, which should be ``morphsequence``.
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3. After running this, we get chart of Rw values for each target file. However, this chart can
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be a bit confusing to interpret. To get a more understandable plot, run ::
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pdfmorph SrFe2As2_150K.gr . --sequence --temperature
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pdfmorph SrFe2As2_150K.gr . --multiple --temperature
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The temperature option can be used when our files end in ``_#K.gr`` or ``_#K.cgr`` where ``#``
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is a temperature (float value). When enabled, PDFmorph will plot Rw values against the temperatures.
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4. Between 192K and 198K, the Rw has a sharp increase, indicating that we may have a phase change.
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To confirm, let us now apply morphs onto ``SrFe2As2_150K.gr`` with all other files in ``morphsequence``
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as targets ::
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pdfmorph --scale=1 --stretch=0 SrFe2As2_150K.gr . --sequence --temperature
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pdfmorph --scale=1 --stretch=0 SrFe2As2_150K.gr . --multiple --temperature
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Note that we are not applying a smear since it takes a long time to apply and does not significantly
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change the Rw values in this example.

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