From fe751253bb17ec8ba5b89d74a1747cb06203b9af Mon Sep 17 00:00:00 2001
From: WardDeb <ward@deboutte.be>
Date: Fri, 25 Apr 2025 22:27:32 +0200
Subject: [PATCH] ignoreduplicates False in old mbs

---
 pydeeptools/deeptools/multiBamSummary.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pydeeptools/deeptools/multiBamSummary.py b/pydeeptools/deeptools/multiBamSummary.py
index 981a99e3c2..7b36746a2d 100644
--- a/pydeeptools/deeptools/multiBamSummary.py
+++ b/pydeeptools/deeptools/multiBamSummary.py
@@ -242,7 +242,7 @@ def main(args=None):
         blackListFileName=args.blackListFileName,
         extendReads=args.extendReads,
         minMappingQuality=args.minMappingQuality,
-        ignoreDuplicates=args.ignoreDuplicates,
+        ignoreDuplicates=False,
         center_read=args.centerReads,
         samFlag_include=args.samFlagInclude,
         samFlag_exclude=args.samFlagExclude,