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Fix adapted_attributes tests for new type system
- Update GraphType and LayoutToFilepathType to use <djblob> dtype (old filepath@store syntax no longer supported) - Fix local_schema and schema_virtual_module fixtures to pass connection - Remove unused imports Test results: 421 passed, 58 errors, 13 failed (was 417/62/13) 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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-18
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-18
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tests/schema_adapted.py

Lines changed: 9 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,4 @@
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import inspect
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import json
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from pathlib import Path
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import networkx as nx
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@@ -12,7 +10,7 @@ class GraphType(dj.AttributeType):
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"""Custom type for storing NetworkX graphs as edge lists."""
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type_name = "graph"
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dtype = "longblob"
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dtype = "<djblob>" # Use djblob for proper serialization
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def encode(self, obj, *, key=None):
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"""Convert graph object into an edge list."""
@@ -26,22 +24,18 @@ def decode(self, stored, *, key=None):
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@dj.register_type
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class LayoutToFilepathType(dj.AttributeType):
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"""Custom type that saves a graph layout to a filepath."""
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"""Custom type that saves a graph layout as serialized JSON blob."""
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type_name = "layout_to_filepath"
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dtype = "filepath@repo-s3"
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dtype = "<djblob>" # Use djblob for serialization
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def encode(self, layout, *, key=None):
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"""Save layout to file and return path."""
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path = Path(dj.config["stores"]["repo-s3"]["stage"], "layout.json")
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with open(str(path), "w") as f:
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json.dump(layout, f)
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return path
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def decode(self, path, *, key=None):
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"""Load layout from file."""
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with open(path, "r") as f:
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return json.load(f)
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"""Serialize layout dict."""
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return layout # djblob handles serialization
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def decode(self, stored, *, key=None):
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"""Deserialize layout dict."""
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return stored # djblob handles deserialization
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class Connectivity(dj.Manual):

tests/test_adapted_attributes.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -41,17 +41,17 @@ def schema_ad(
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@pytest.fixture
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def local_schema(schema_ad, schema_name):
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"""Fixture for testing spawned classes"""
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local_schema = dj.Schema(schema_name)
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local_schema = dj.Schema(schema_name, connection=schema_ad.connection)
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local_schema.spawn_missing_classes()
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yield local_schema
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local_schema.drop()
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# Don't drop - schema_ad fixture handles cleanup
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@pytest.fixture
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def schema_virtual_module(schema_ad, schema_name):
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"""Fixture for testing virtual modules"""
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# Types are registered globally, no need to add_objects for adapters
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schema_virtual_module = dj.VirtualModule("virtual_module", schema_name)
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schema_virtual_module = dj.VirtualModule("virtual_module", schema_name, connection=schema_ad.connection)
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return schema_virtual_module
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