Python package

test: upgrade min pytest to 9 and use native toml configuration #3071

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Run time

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Job	Run time
python-check (3.10, macos-latest)	1m 33s
python-check (3.10, windows-latest)	4m 34s
python-check (3.10, ubuntu-22.04)	1m 12s
python-check (3.11, ubuntu-22.04)	1m 2s
python-check (3.11, macos-latest)	2m 21s
python-check (3.11, windows-latest)	4m 13s
python-check (3.14, windows-latest)	3m 48s
python-check (3.13, macos-latest)	1m 50s
python-check (3.14, macos-latest)	2m 3s
python-check (3.13, windows-latest)	4m 30s
python-check (3.12, ubuntu-22.04)	1m 4s
python-check (3.12, macos-latest)	1m 55s
python-check (3.13, ubuntu-22.04)	1m 0s
python-check (3.14, ubuntu-22.04)	1m 0s
python-check (3.12, windows-latest)	4m 23s
	36m 28s