From be7a04e6afde910a7a1b812962f837383dd868bd Mon Sep 17 00:00:00 2001 From: Paul Wilkinson Date: Mon, 15 Dec 2025 11:20:29 -0500 Subject: [PATCH 1/2] Fixed url for dnaseq tracks generating a track error --- Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm b/Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm index 746a1139cd..2471b2cf79 100644 --- a/Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm +++ b/Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm @@ -55,7 +55,9 @@ sub new { $self->setMin(0); $self->setMax(500); $self->setYScalePosition("left"); - $self->setChunkSizeLimit(50000000); + #$self->setChunkSizeLimit(50000000); + $self->setChunkSizeLimit(2000000000); + #$self->fetchSizeLimit(2000000000); if($args->{skip_histograms}) { $self->{_skip_histograms} = 1; @@ -89,6 +91,8 @@ sub getHistograms { my $store = $self->getStore(); my $bigwigUrl = $store->getBigwigUrl(); + $bigwigUrl = "/a/service/jbrowse/store?data=" . $bigwigUrl; + my $histograms = {}; #$histograms->{color} = $self->getColor(); From bd50a4439dbd633995c18d8031382544f67618db Mon Sep 17 00:00:00 2001 From: Paul Wilkinson Date: Mon, 15 Dec 2025 11:39:54 -0500 Subject: [PATCH 2/2] revert chunkSizeLimit to 50000000 --- Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm b/Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm index 2471b2cf79..6b07d66e1b 100644 --- a/Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm +++ b/Model/lib/perl/JBrowseTrackConfig/AlignmentsTrackConfig.pm @@ -55,9 +55,7 @@ sub new { $self->setMin(0); $self->setMax(500); $self->setYScalePosition("left"); - #$self->setChunkSizeLimit(50000000); - $self->setChunkSizeLimit(2000000000); - #$self->fetchSizeLimit(2000000000); + $self->setChunkSizeLimit(50000000); if($args->{skip_histograms}) { $self->{_skip_histograms} = 1;