'make' error

[akshayMpatel]

Hello, I'm getting an error during make.

I'm working on macOS Big Sur and installed cmake, opencv, pcl, qt5, eigen, vtk, ... with brew and assume they are the latest versions. vtk for example is 9.0, and during cmake I get following warning.

CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-use-file-deprecated.cmake:1 (message):
  The `VTK_USE_FILE` is no longer used starting with 8.90.
Call Stack (most recent call first):
  /usr/local/share/pcl-1.12/PCLConfig.cmake:340 (include)
  /usr/local/share/pcl-1.12/PCLConfig.cmake:539 (find_external_library)
  CMakeLists.txt:19 (FIND_PACKAGE)

When I run make I get a bad constructor error.

$ make
Consolidate compiler generated dependencies of target core
[ 15%] Built target core
Consolidate compiler generated dependencies of target synNotchStatsNoSeg
[ 26%] Built target synNotchStatsNoSeg
Consolidate compiler generated dependencies of target synNotchStats
[ 36%] Built target synNotchStats
Consolidate compiler generated dependencies of target elmSegmentation
[ 42%] Building CXX object bin/applications/segment/CMakeFiles/elmSegmentation.dir/elmSegmentation.cpp.o
/Users/akshay/Projects/TASBEImageAnalytics/src/applications/segment/elmSegmentation.cpp:193:8: warning: 'random_shuffle<std::reverse_iterator<std::__wrap_iter<unsigned int *>>>' is deprecated [-Wdeprecated-declarations]
                std::random_shuffle(svxIds.rbegin(), svxIds.rend());
                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/algorithm:3119:1: note: 'random_shuffle<std::reverse_iterator<std::__wrap_iter<unsigned int *>>>' has been explicitly marked deprecated here
_LIBCPP_DEPRECATED_IN_CXX14 void
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/__config:1052:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX14'
#  define _LIBCPP_DEPRECATED_IN_CXX14 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
/Users/akshay/Projects/TASBEImageAnalytics/src/applications/segment/elmSegmentation.cpp:208:8: warning: 'random_shuffle<std::reverse_iterator<std::__wrap_iter<unsigned int *>>>' is deprecated [-Wdeprecated-declarations]
                std::random_shuffle(clusterIds.rbegin(), clusterIds.rend());
                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/algorithm:3119:1: note: 'random_shuffle<std::reverse_iterator<std::__wrap_iter<unsigned int *>>>' has been explicitly marked deprecated here
_LIBCPP_DEPRECATED_IN_CXX14 void
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/__config:1052:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX14'
#  define _LIBCPP_DEPRECATED_IN_CXX14 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
/Users/akshay/Projects/TASBEImageAnalytics/src/applications/segment/elmSegmentation.cpp:368:17: error: no matching constructor for initialization of 'pcl::PointXYZRGBL'
                        PointXYZRGBL ptl(pt.r, pt.g, pt.b, currCluster);
                                     ^   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/include/pcl-1.12/pcl/impl/point_types.hpp:717:12: note: candidate constructor not viable: requires 3 arguments, but 4 were provided
    inline PointXYZRGBL (std::uint8_t _r, std::uint8_t _g, std::uint8_t _b):
           ^
/usr/local/include/pcl-1.12/pcl/impl/point_types.hpp:720:12: note: candidate constructor not viable: requires 3 arguments, but 4 were provided
    inline PointXYZRGBL (float _x, float _y, float _z):
           ^
/usr/local/include/pcl-1.12/pcl/impl/point_types.hpp:707:12: note: candidate constructor not viable: requires single argument 'p', but 4 arguments were provided
    inline PointXYZRGBL (const _PointXYZRGBL &p)
           ^
/usr/local/include/pcl-1.12/pcl/impl/point_types.hpp:714:12: note: candidate constructor not viable: allows at most single argument '_label', but 4 arguments were provided
    inline PointXYZRGBL (std::uint32_t _label = 0):
           ^
/usr/local/include/pcl-1.12/pcl/impl/point_types.hpp:705:24: note: candidate constructor (the implicit copy constructor) not viable: requires 1 argument, but 4 were provided
  struct EIGEN_ALIGN16 PointXYZRGBL : public _PointXYZRGBL
                       ^
/usr/local/include/pcl-1.12/pcl/impl/point_types.hpp:705:24: note: candidate constructor (the implicit move constructor) not viable: requires 1 argument, but 4 were provided
/usr/local/include/pcl-1.12/pcl/impl/point_types.hpp:723:12: note: candidate constructor not viable: requires at least 6 arguments, but 4 were provided
    inline PointXYZRGBL (float _x, float _y, float _z,
           ^
2 warnings and 1 error generated.
make[2]: *** [bin/applications/segment/CMakeFiles/elmSegmentation.dir/elmSegmentation.cpp.o] Error 1
make[1]: *** [bin/applications/segment/CMakeFiles/elmSegmentation.dir/all] Error 2
make: *** [all] Error 2

Any help would be much appreciated.

[arlith]

Do you know what version of PCL you're using? The CMakeLists.txt asks for 1.7, although I think I was on version 1.8 at the time. It looks like there's now a 1.9, 1.10, 1.11 and 1.12. If you just installed via brew I would think you are on 1.12, which may be the source of the compile issue. Could you try using an older version of pcl?

[arlith]

Alternatively, the error output tells you what you can do to fix the issue... The problem is this:

/Users/akshay/Projects/TASBEImageAnalytics/src/applications/segment/elmSegmentation.cpp:368:17: error: no matching constructor for initialization of 'pcl::PointXYZRGBL'
                        PointXYZRGBL ptl(pt.r, pt.g, pt.b, currCluster);

It looks like that constructor for PointXYZRGBL doesn't exist in whatever version of PCL you have. There's probably an X,Y,Z,R,G,B,L constructor that could be used instead. You could potentially change that line to be:

PointXYZRGBL ptl(pt.x, pt.y, pt.z, pt.r, pt.g, pt.b, currCluster);

Or, alternatively,

PointXYZRGBL ptl;
ptl.x = pt.x; ptl.y = pt.y; ptl.z = pt.z;
ptl.r = pt.r; ptl.g = pt.g; ptl.b = pt.b;
ptl.l = currCluster;