You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: index.md
+7-8Lines changed: 7 additions & 8 deletions
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -26,14 +26,13 @@ Spatially resolved transcriptomics allows us to resolve gene expression in the n
26
26
27
27
The focus of our BioHackathon project will be on investigating, reporting, and improving user guides for imaging-based spatial transcriptomics. The format will be a hackathon with a "bring your own project" setup. Not everyone needs to propose a project, but here are some projects that some people will be bringing with them:
28
28
29
-
- user guides for data deposition
30
-
- spatial trancriptomics data analysis best practices
31
-
- normalization
32
-
- (non)uniform gene expression over the tissue area
33
-
- segmentation-free analysis
34
-
- comparison of segmentation algorithms
35
-
- spatial multi-omics clustering
36
-
- the use of spatial statistics in spatial omics
29
+
1.[BioImageArchive spatial transcriptomics data deposition guide](https://github.com/orgs/SpatialHackathon/projects/17) (Teresa Zulueta-Coarasa, EBI/UK)
30
+
2.[Spatial QC - gene expression uniformity over tissue](https://github.com/orgs/SpatialHackathon/projects/16) (Brian Long, Allen Brain Isnt/USE)
31
+
3.[A Hitchhiker’s guide to a spatial data analysis](https://github.com/orgs/SpatialHackathon/projects/11) (Sara Jimenez and Francesca Drummer, Munich/DE)
32
+
4.[Effect of segmentation & pre-processing on spatial perturbation modelling](https://github.com/orgs/SpatialHackathon/projects/12) (George Gavriliidis, CERTG/GR)
33
+
5.[PASTA - a guide for spatial statistics application to spatial transcriptomics](https://github.com/orgs/SpatialHackathon/projects/14) (Samuel Gunz and Martin Emons, UZH/CH)
34
+
6.[SEGGER - delving into the dark side of cell segmentation](https://github.com/orgs/SpatialHackathon/projects/15) (Elias Hydari, Heidelberg/DE)
35
+
7.[SpatialLeiden v2 - adding multi-omics and multi-sample support](https://github.com/orgs/SpatialHackathon/projects/6) (Niklas Boetticher and Paul Kiessling, BIH/DE, Aachen/DE)
37
36
38
37
While the primary aim of the project will be to have fun and meet other spatial researchers, we will endeavour to disseminate our findings. This year we plan to wrap up our progress into a [BioHackRxiv](https://osf.io/preprints/biohackrxiv) white paper.
0 commit comments