Update schedule.md

Author: naveedishaque

schedule.md

@@ -16,53 +16,52 @@ This hackathon will take place from **Monday 9th Dec - Wednesday 11th Dec 2024**
 --->
 ### Day 1: Monday 9th December 2024 [Times in CET]
 09:30-10:00 Arrival and coffee - [Esther Lederberg conference room, floor 2 room 328](https://www.google.com/maps/place/Luisenstra%C3%9Fe+65,+10115+Berlin/@52.526864,13.376844,16z/data=!3m1!4b1!4m6!3m5!1s0x47a851ead44e366b:0xa6f8722630c14a29!8m2!3d52.526864!4d13.3794189!16s%2Fg%2F11c26_hb91?entry=ttu&g_ep=EgoyMDI0MDkwOS4wIKXMDSoASAFQAw%3D%3D) <br>
-10:00-10:30	Welcome and introduction SpaceHack |
-<a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/1_SpaceHack_3.0_intro_v1.pdf" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> |
+10:00-10:30	Welcome and introduction SpaceHack
+<a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/1_SpaceHack_3.0_intro_v3.pdf" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>,
 *Naveed Ishaque, Berin Institute of Health*<br>
-10:30-11:00 SpaceHack [Cloud](https://jhub.bihealth.org/) and [GitHub](https://github.com/orgs/SpatialHackathon/teams/spacehack3-0) | 
-<a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/1_SpaceHack_3.0_cloud_v1.pdf" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> |
+10:30-11:00 SpaceHack [Cloud](https://jhub.bihealth.org/) and [GitHub](https://github.com/orgs/SpatialHackathon/teams/spacehack3-0) 
+<a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/1_SpaceHack_3.0_cloud_v1.pdf"><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>,
 *Sven Twardziok and Naveed Ishaque, Berin Institute of Health*<br>
-11:00-11:15 Cell segmentation from commercial platforms - the past, present & future | 
-<a href="" ><img src="images/google_slides_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> |
+11:00-11:15 Cell segmentation from commercial platforms - the past, present & future 
+<a href="" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>, 
 *Thomas Conrad, Berin Institute of Health*<br>
-11:15-11:30 10X Genomics - tech, data, project pitch | 
-<a href="" ><img src="images/google_slides_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> |
+11:15-11:30 10X Genomics - tech, data, project pitch 
+<a href="" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>,
 *Patrik Roelli, 10x Genomics*<br>
-11:30-11:45 Vizgen - tech, data, project pitch | 
-<a href="" ><img src="images/google_slides_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> |
+11:30-11:45 Vizgen - tech, data, project pitch 
+<a href="" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>,
 *Dries Vanhemelen, Vizgen*<br>
-11:45-12:00 Nanostring/Bruker - tech, data, project pitch | 
-<a href="" ><img src="images/google_slides_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> |
+11:45-12:00 Nanostring/Bruker - tech, data, project pitch 
+<a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/09122024_SpaceHack_BIH_Koenig_BrukerSpatialBio.pdf" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>,
 *Christoph Koenig, Nanostring/Bruker*<br>
 12:00-13:00	**Lunch** <br>
-13:00-13:30 Stand up and pitch your projects<br>
+13:00-13:30 Stand up and pitch your projects<be>
+ - Project 1 - BioImageArchive spatial transcriptomics data deposition guide <a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/BIA_SpaceHack_project_pich_tzc.pdf" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>, *Teresa Zulueta-Coarasa* 
+ - Project 2 - SpatialCompare <a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/1_SpaceHack_3.0_Brian_Long_SpatialCompare.pdf" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>, *Brian Long, Florian Heyl* 
+ - Project 3 - A Hitchhiker’s guide to a spatial data analysis, *Sara Jimenez, Francesca Drummer*
+ - Project 4 - SpacePerturb <a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/SpacePerturb_key.pdf" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>, *George Gavriilidis*
+ - Project 5 - PASTA: a guide for spatial statistics application to spatial transcriptomics, * Samuel Gunz, Martin Emons*
+ - Project 6 - SEGGER - delving into the dark side of cell segmentation, *Elyas Heidari*
+ - Project 7 - SpatialLeiden v2 - adding multi-omics and multi-sample support, * Niklas Boetticher and Paul Kiessling*
+
 13:30-14:30 Match making - join project teams and start hacking<br>
 14:30-15:00 Coffee/tea break<br>
 15:00-17:15 Hacking!<br>
-17:15-17:30 Uniformity of gene expression over tissues | 
-<a href="" ><img src="images/google_slides_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> |
+17:15-17:30 Uniformity of gene expression over tissues 
+<a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/SpaceHack3_Brian_Long_talk.pdf" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>,
 *Brian Long, Allen Inst for Brain Science*<br>
 17:30-18:00 USA alignment - quick overview of GitHub, Cloud, and projects <br>
-18:00-18:15 Talk - The European Society for Spatial Biology | 
-<a href="" ><img src="images/google_slides_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> |
+18:00-18:15 Talk - The European Society for Spatial Biology 
+<a href="" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>,
 *<a href="https://www.schapirolab.com/">Denis Schapiro</a>, Heidelberg University Hospital* <br>
 18:15-20:00	sponsored activity: <a href="https://www.computerspielemuseum.de/">Berlin Computer Game Museum</a> with guided tour. Karl-Marx-Allee 93a, 10243 Berlin. <br>
 21:00-23:00 sponsored dinner:  <a href="https://www.ristorante-vesuvio-berlin.de/speisekarte-weinkarte/">Vesuvio Trattoria</a>. Strausberger Pl. 8, 10243 Berlin. 2 course menu. Choice of 6 dishes. 3 drinks included.  <br>
 
 ### Day 2: Tuesday 10th December 2024
 
 09:00-09:30 Alignment with Australia + project recap<br>
-09:30-10:00 The EBI BioImage Archive for Spatial Transcriptomics | 
-<a href="" ><img src="images/google_slides_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> |
+09:30-10:00 The EBI BioImage Archive for Spatial Transcriptomics 
+<a href="https://github.com/SpatialHackathon/presentations_2024/blob/main/BIA_SpaceHack_project_pich_tzc.pdf" ><img src="images/PDF_icon.png" alt="drawing" height="12"/></a>,
 *Teresa Zulueta-Coarasa, EBI BioImage Archive*<br>
 10:00-12:00 Hacking (inc coffee break)<br>
 12:00-13:00 Lunch<br>
@@ -80,8 +79,14 @@ This hackathon will take place from **Monday 9th Dec - Wednesday 11th Dec 2024**
 12:00-13:00 Lunch<br>
 13:00-15:00	Project wrap up, presentation preparation, BioHackRxiv-ing<br>
 15:00-15:30	Break<br>
-15:30-17:00 Presentation from team leads |
-<a href="" ><img src="images/google_slides_icon.png" alt="drawing" height="12"/></a> 
-<a href=""><img src="images/recording_icon.png" alt="drawing" height="12"/></a> <br>
+15:30-17:00 Presentation from team leads 
+ - Project 1 - BioImageArchive spatial transcriptomics data deposition guide, *Teresa Zulueta-Coarasa* 
+ - Project 2 - SpatialCompare, *Brian Long, Florian Heyl* 
+ - Project 3 - A Hitchhiker’s guide to a spatial data analysis, *Sara Jimenez, Francesca Drummer*
+ - Project 4 - SpacePerturb, *George Gavriilidis*
+ - Project 5 - PASTA: a guide for spatial statistics application to spatial transcriptomics, * Samuel Gunz, Martin Emons*
+ - Project 6 - SEGGER - delving into the dark side of cell segmentation, *Elyas Heidari*
+ - Project 7 - SpatialLeiden v2 - adding multi-omics and multi-sample support, * Niklas Boetticher and Paul Kiessling*
+
 17:00-18:00 Alignment with USA<br>