working GET endpoint add, POST is setup

Author: NikkiBytes

src/config.py

@@ -96,6 +96,7 @@
     (r"/api/metakg/consolidated/?", "handlers.api.MetaKGQueryHandler", {"biothing_type": "metakg_consolidated"}),
     (r"/api/metakg/consolidated/fields/?", "biothings.web.handlers.MetadataFieldHandler", {"biothing_type": "metakg_consolidated"}),
     (r"/api/metakg/paths/?", "handlers.api.MetaKGPathFinderHandler", {"biothing_type": "metakgpathfinder"}),
+    (r"/api/metakg/parse/?", "handlers.api.MetaKGParserHandler"),
 ]
 
 # biothings web tester will read this

src/controller/smartapi.py

@@ -369,8 +369,28 @@ def is_trapi(self):
         """return True if a TRAPI"""
         return self.has_tags("trapi", "translator")
 
-    def get_metakg(self, include_trapi=True):
-        raw_metadata = decoder.to_dict(decoder.decompress(self._doc._raw))
+    # def get_metakg(self, include_trapi=True):
+    #     raw_metadata = decoder.to_dict(decoder.decompress(self._doc._raw))
+    #     mkg_parser = MetaKGParser()
+    #     extra_data = {"id": self._id, "url": self.url}
+    #     self.metakg_errors = None  # reset metakg_errors
+    #     if self.is_trapi:
+    #         metakg = mkg_parser.get_TRAPI_metadatas(raw_metadata, extra_data) if include_trapi else []
+    #     else:
+    #         metakg = mkg_parser.get_non_TRAPI_metadatas(raw_metadata, extra_data)
+    #     if mkg_parser.metakg_errors:
+    #         # hold metakg_errors for later use
+    #         self.metakg_errors = mkg_parser.metakg_errors
+    #     return metakg
+
+    def get_metakg(self, include_trapi=True, metadata_url=False):
+        if metadata_url:
+            data_id = decoder.get_id(self.url) # get ID
+            doc = self.get(data_id)# get smartapi data
+            self._doc = doc._doc
+            raw_metadata = decoder.to_dict(decoder.decompress(doc._doc._raw))
+        else:
+            raw_metadata = decoder.to_dict(decoder.decompress(self._doc._raw))
         mkg_parser = MetaKGParser()
         extra_data = {"id": self._id, "url": self.url}
         self.metakg_errors = None  # reset metakg_errors

src/handlers/api.py

@@ -686,3 +686,32 @@ async def get(self, *args, **kwargs):
             }
         await asyncio.sleep(0.01)
         self.finish(res)
+
+class MetaKGParserHandler(QueryHandler):
+    name="metakgparser"
+    kwargs = {
+        "GET": {
+            "url": {
+                "type": str,
+                "required": True, 
+                "max": 1000,
+                "description": "URL of the SmartAPI metadata to parse"
+            },
+        },
+        "POST": {
+            "type": dict,
+            "required": True,
+            "description": "Metadata content of the SmartAPI in JSON format"
+            },
+    }
+    
+
+    async def get(self, *args, **kwargs):
+        if self.request.method == "GET":
+            smartapi = SmartAPI(self.args.url)
+            content=smartapi.get_metakg(metadata_url=self.args.url)
+            self.finish(f"{content}")
+        elif self.request.method == "POST":
+            print(f"\n\n[INFO] HERE")
+            # pass
+            self.finish(f"HERE")