Release v0.1.25

Merge pull request #116 from PEtab-dev/release_v0_1_25

Author: dweindl

.ci_pip_reqs.txt

@@ -7,3 +7,5 @@ sphinxcontrib-napoleon
 sphinx-markdown-tables
 sphinx-rtd-theme
 recommonmark
+# https://github.com/spatialaudio/nbsphinx/issues/641
+Jinja2==3.0.3

CHANGELOG.md

@@ -2,6 +2,13 @@
 
 ## 0.1 series
 
+### 0.1.25
+* Fix for pytest 7.1 by @yannikschaelte in https://github.com/PEtab-dev/libpetab-python/pull/112
+* Fix jinja version by @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/115
+* Add steady state constant by @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/114
+
+**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.1.24...v0.1.25
+
 ### 0.1.24
 
 * Added method to generate condition-specific SBML models by @dweindl in

petab/C.py

@@ -3,6 +3,9 @@
 This file contains constant definitions.
 """
 
+import math
+
+
 # MEASUREMENTS
 
 #:
@@ -20,6 +23,9 @@
 #:
 TIME = 'time'
 
+#: Time value that indicates steady-state measurements
+TIME_STEADY_STATE = math.inf
+
 #:
 OBSERVABLE_PARAMETERS = 'observableParameters'
 

petab/version.py

@@ -1,2 +1,2 @@
 """PEtab library version"""
-__version__ = '0.1.24'
+__version__ = '0.1.25'

setup.py

@@ -82,6 +82,8 @@ def absolute_links(txt):
               'nbsphinx>=0.8.2',
               'm2r>=0.2.1',
               'ipython>=7.21.0',
+              # https://github.com/spatialaudio/nbsphinx/issues/641
+              'Jinja2==3.0.3',
           ]
       }
       )

tests/test_calculate.py

@@ -202,8 +202,8 @@ def test_calculate_residuals(models):  # pylint: disable=W0621
          expected_residuals, _, _) = model
         residual_dfs = calculate_residuals(
             measurement_df, simulation_df, observable_df, parameter_df)
-        assert set(residual_dfs[0][RESIDUAL]) == pytest.approx(
-            expected_residuals)
+        assert sorted(residual_dfs[0][RESIDUAL]) == \
+            pytest.approx(sorted(expected_residuals))
 
 
 def test_calculate_non_normalized_residuals(models):  # pylint: disable=W0621
@@ -215,8 +215,8 @@ def test_calculate_non_normalized_residuals(models):  # pylint: disable=W0621
         residual_dfs = calculate_residuals(
             measurement_df, simulation_df, observable_df, parameter_df,
             normalize=False)
-        assert set(residual_dfs[0][RESIDUAL]) == pytest.approx(
-            expected_residuals_nonorm)
+        assert sorted(residual_dfs[0][RESIDUAL]) == \
+            pytest.approx(sorted(expected_residuals_nonorm))
 
 
 def test_calculate_chi2(models):  # pylint: disable=W0621