diff --git a/lib/import/brca/scripts/bash/Import_all_brca_interactive.sh b/lib/import/brca/scripts/bash/Import_all_brca_interactive.sh index 74a91f25..8e09383e 100755 --- a/lib/import/brca/scripts/bash/Import_all_brca_interactive.sh +++ b/lib/import/brca/scripts/bash/Import_all_brca_interactive.sh @@ -134,7 +134,10 @@ done RQ3 () { PROV='RQ3' IFS=$'\n' +# Ignore 2 RQ3 files submitted in 2026 which contain both BRCA and Germline data. +# Our plan is not to load these as pseudonymised data, but rather into live encore. for x in $(find $DIRPATH/$FILEPATH -type f -name "*.pseudo" -path "*/$PROV/*" \ +-not -path "*/2026/*" \ -not -path "*/2018-02-06/*" \ ! -iname "*Rare*" \ ! -iname "*Colon*" \ @@ -151,7 +154,9 @@ RJ1 () { MBIS=$1 PROV='RJ1' IFS=$'\n' +# Germline refresh should ignore new RJ1 data files submitted in 2026 in a new format. for x in $(find $DIRPATH/$FILEPATH -type f -name "*.pseudo" -path "*/$PROV/*" \ +-not -path "*/2026/*" \ ! -name ""Dummy_Pseudo_RJ1.pseudo) do IFS="$OIFS"