From d3e9a274306c314151f02cc76e8191ace9fa7a23 Mon Sep 17 00:00:00 2001
From: shilpigoel <shilpi.goel1@nhs.net>
Date: Thu, 15 Jan 2026 16:41:24 +0000
Subject: [PATCH] Corrected scripts for Sheffield

---
 .../brca/scripts/bash/Import_all_brca_interactive.sh      | 8 +++++---
 .../scripts/bash/Import_all_colorectal_interactive.sh     | 2 ++
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/lib/import/brca/scripts/bash/Import_all_brca_interactive.sh b/lib/import/brca/scripts/bash/Import_all_brca_interactive.sh
index cc2dcc2a..6f482619 100755
--- a/lib/import/brca/scripts/bash/Import_all_brca_interactive.sh
+++ b/lib/import/brca/scripts/bash/Import_all_brca_interactive.sh
@@ -113,16 +113,18 @@ RCU () {
 PROV='RCU'
 IFS=$'\n'
 for x in $(find $DIRPATH/$FILEPATH -type f -path "*/$PROV/*" \
-\( -iname "*BRCA*.pseudo" -o -iname "*HBOC*.pseudo" -o \
-	-name "*1dbb561a296d1efcf685bd67a3b*pseudo" \)  \
+\( -iname "*BRCA*.pseudo" -o -iname "*HBOC*.pseudo" -o -iname "*BrOvCa*.pseudo" -o \
+  -name "*1dbb561a296d1efcf685bd67a3b*pseudo" \)  \
 ! -iname "*NON_CRC_HBOC_*" \
 ! -iname "*lynch*" \
 ! -iname "*nonBRCA*" \
+! -iname "*non_BrOvCa*" \
+! -iname "*nonBrOvCa*" \
 ! -iname "*Colorectal*" \
 ! -iname "*Hereditary Cancer_Other*" )
 do
   if echo "$x" | grep -q "576f0670b0490bc788f673a5653c28cc1f7e7f7" || ! echo "$x" | grep -q "CRC"; then
-	IFS="$OIFS"
+  IFS="$OIFS"
     $BRAKE import:brca fname="$(echo "$x" | sed -e 's:.*pseudonymised_data/\(.*\):\1:')" prov_code=$PROV
   fi
 done
diff --git a/lib/import/colorectal/scripts/bash/Import_all_colorectal_interactive.sh b/lib/import/colorectal/scripts/bash/Import_all_colorectal_interactive.sh
index 5962051e..a1c9b611 100755
--- a/lib/import/colorectal/scripts/bash/Import_all_colorectal_interactive.sh
+++ b/lib/import/colorectal/scripts/bash/Import_all_colorectal_interactive.sh
@@ -90,6 +90,8 @@ for x in $(find $DIRPATH/$FILEPATH -type f -path "*/$PROV/*" \
 	-name "*b20327dfab493e86e7f65e89663fb551*pseudo" \) \
 ! -iname "*NON_BRCA_CRC*" \
 ! -iname "*NonBRCA_CRC*" \
+! -iname "*non_BrOvCa_CRC*" \
+! -iname "*NonBrOvCa_CRC*" \
 ! -iname "*Non_CRC*" \
 ! -iname "*nonBRCA_nonCRC*" \
 ! -iname "*NonBRCA_NonColorectal*" \