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KazeemHamzatKazeemHamzat
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Feature-IOPS-2380-Test-Order-Form-Storage-of-Material (#47)
* Add SR & Task for Storage Add SR & Task for Storage * Add SR & Task for New Request Add SR & Task for New Test Request to use the earlier stored specimen * Update SR Update SR for Storage request * Update SR, Task, Add Patient & PractitionerRole * Update: Change status of Task resource Change status of Task resource to accept specimen storage * Rename Task-TestOrderFormAccepted-StorageOfMaterial Rename Task-TestOrderFormAccepted-StorageOfMaterial
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‎Patient/Patient-TimMclullics-Example.json‎

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{
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"resourceType": "Patient",
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"id": "Patient-TimMclullichs-Example",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex",
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"valueCode": "M"
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},
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland",
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"code": "A",
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"display": "White - British"
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}
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]
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}
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}
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],
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303452",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland",
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"version": "2.2.0",
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"code": "01",
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"display": "Number present and verified"
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}
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]
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}
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}
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]
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},
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{
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
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"value": "RTH17845",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RTH"
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}
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}
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}
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],
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"name": [
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{
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"given": [
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"Tim"
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],
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"family": "Mclullichs"
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}
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],
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"gender": "male",
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"birthDate": "1954-10-29",
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"deceasedBoolean": false,
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"address": [
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{
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"line": [
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"1 Outwood Road",
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"Crosswinds, Chipstead,"
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],
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"city": "Buckinghamshire",
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"postalCode": "OM10 8DF"
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}
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],
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"generalPractitioner": [
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{
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"identifier": {
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"system": "https://fhir.hl7.org.uk/Id/gmp-number",
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"value": "G9999999"
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},
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"display": "Dr. Aero Smith"
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},
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{
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"identifier": {
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"system": "https://fhir.hl7.org.uk/Id/ODS-code",
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"value": "TP123"
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},
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"display": "123 Test Practice"
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}
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],
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"link": [
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{
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"other": {
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"reference": "https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/8449303452"
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},
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"type": "seealso"
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}
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]
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}

‎PractitionerRole/PractitionerRole-OscarShields-Example.json‎

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{
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"resourceType": "PractitionerRole",
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"id": "PractitionerRole-OscarShields-Example",
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"practitioner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/sds-user-id",
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"value": "9999999999"
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},
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"display": "Dr. Oscar Shields"
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},
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"organization": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RTH"
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},
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"display": "Oxford University NHS Foundation Trust"
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},
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"specialty": [
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{
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PracticeSettingCode",
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"code": "820",
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"display": "General Pathology"
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}
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]
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}
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],
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"telecom": [
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{
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"system": "phone",
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"value": "03003047777"
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},
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{
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"system": "email",
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"value": "oscar.shields@nhs.net"
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},
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{
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"system": "email",
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"value": "oxfordpathology@nhs.net",
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"extension": [
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{
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"url": "http://hl7.org/fhir/StructureDefinition/contactpoint-comment",
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"valueString": "reporting"
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}
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]
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}
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]
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}

‎ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example.json‎

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{
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"resourceType": "ServiceRequest",
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"id": "ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
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"code": "nhs",
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"display": "NHS"
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}
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]
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}
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}
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],
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"status": "active",
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"intent": "order",
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"category": [
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{
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory",
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"code": "rare-disease-non-wgs",
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"display": "Rare Disease - Non-WGS"
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}
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]
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}
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],
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R134",
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"display": "Familial Hypercholesterolaemia"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-TimMclullichs-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303452"
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}
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},
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"authoredOn": "2023-11-02T11:00:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-OscarShields-Example"
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},
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"reasonCode": [
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{
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1186936003",
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"display": "Storage of specimen"
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}
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]
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}
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],
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"supportingInfo": [
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{
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"reference": "Observation/Observation-GenomicEthnicity-Example"
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},
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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},
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{
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"reference": "Observation/Observation-NonConsanguinousUnion-Example"
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},
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{
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"reference": "FamilyMemberHistory/FamilyMemberHistory-NonConsanguinousUnion-Example"
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},
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{
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"reference": "Observation/Observation-NoBoneMarrowTransplant-Example"
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},
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{
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"reference": "Observation/Observation-NoTransfusion-Example"
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},
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{
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"reference": "Observation/Observation-DutchLipidScore-Example"
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},
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{
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"reference": "Observation/Observation-QueryXanthoma-Example"
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},
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{
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"reference": "Observation/Observation-SimonBroomeCriteria-Example"
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}
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],
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"specimen": [
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{
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"reference": "Specimen/Specimen-BloodEDTA-WithCollectoinDetails-Example",
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"identifier": [
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{
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"system": "https://fhir.bwc.nhs.uk//Id/specimenId",
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"value": "RQ3-RTH-698C0-17543",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "RQ3"
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}
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}
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}
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]
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}
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],
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"note": [
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{
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"text": "No family history of genomic testing"
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},
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{
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"text": "Free text for diagnosis/reason for referral, relevant information including family history, phenotypic details/ HPO Terms/ patient to be tested for FH, use existing DNA sample in storage"
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}
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]
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}

‎ServiceRequest/ServiceRequest-TestOrderForm-StorageOfMaterial-Example.json‎

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{
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"resourceType": "ServiceRequest",
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"id": "ServiceRequest-TestOrderForm-StorageOfMaterial-Example",
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"extension": [
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{
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"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
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"code": "nhs",
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"display": "NHS"
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}
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]
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}
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}
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],
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"status": "active",
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"intent": "order",
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"priority": "routine",
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R346",
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"display": "DNA to be stored"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-TimMclullichs-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303452"
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}
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},
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"authoredOn": "2023-10-28T11:00:00Z",
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"requester": {
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"reference": "PractitionerRole/PractitionerRole-OscarShields-Example"
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},
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"reasonCode": [
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{
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1186936003",
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"display": "Storage of specimen"
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}
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]
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}
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],
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"supportingInfo": [
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{
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"reference": "Observation/Observation-GenomicEthnicity-Example"
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},
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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},
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{
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"reference": "Observation/Observation-NonConsanguinousUnion-Example"
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},
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{
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"reference": "FamilyMemberHistory/FamilyMemberHistory-NonConsanguinousUnion-Example"
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},
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{
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"reference": "Observation/Observation-NoBoneMarrowTransplant-Example"
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},
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{
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"reference": "Observation/Observation-NoTransfusion-Example"
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}
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],
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"note": [
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{
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"text": "Specimen will be provided at a later date"
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},
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{
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"text": "No family history of genomic testing"
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},
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{
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"text": "Free text for diagnosis/reason for referral, transplant, life status at time of request details/ E.g. DNA to be stored for future testing"
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}
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]
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}

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