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Addition of MessageDefinitions for Genomics
Test orders and responses Commit also includes additional CodeSystems required for event coding and a CapabilityStatement for validation
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‎AdditionalFolders/CapabilityStatement/.gitignore‎

Whitespace-only changes.

‎AdditionalFolders/CodeSystem/.gitignore‎

Whitespace-only changes.

‎AdditionalFolders/MessageDefinition/.gitignore‎

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‎CapabilityStatement/CapabilityStatement-genomics-requirements.json‎

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{
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"resourceType": "CapabilityStatement",
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"id": "genomics-requirements",
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"url": "https://fhir.nhs.uk/CapabilityStatement/genomics-requirements",
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"version": "0.1.0",
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"name": "GenomicsRequirements",
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"status": "draft",
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"date": "2022-11-25T00:00:00+00:00",
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"publisher": "digital.nhs.uk",
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"description": "Conformance requirements for NHS Digital Genomics Implementation Guide",
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"kind": "requirements",
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"fhirVersion": "4.0.1",
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"format": [
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"application/fhir+json",
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"application/fhir+xml"
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],
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"rest": [
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{
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"mode": "server",
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"security": {
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"service": [
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{
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/restful-security-service",
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"code": "OAuth",
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"display": "OAuth2 Token"
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}
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]
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}
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]
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},
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"resource": [
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{
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"type": "Bundle",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Bundle"
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},
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{
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"type": "CodeSystem",
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"profile": "http://hl7.org/fhir/StructureDefinition/CodeSystem"
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},
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{
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"type": "ConceptMap",
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"profile": "http://hl7.org/fhir/StructureDefinition/ConceptMap"
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},
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{
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"type": "HealthcareService",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-HealthcareService"
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},
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{
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"type": "MessageDefinition",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-MessageDefinition"
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},
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{
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"type": "NamingSystem",
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"profile": "http://hl7.org/fhir/StructureDefinition/NamingSystem"
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},
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{
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"type": "Parameters",
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"profile": "http://hl7.org/fhir/StructureDefinition/Parameters"
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},
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{
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"type": "StructureMap",
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"profile": "http://hl7.org/fhir/StructureDefinition/StructureMap"
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},
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{
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"type": "ValueSet",
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"profile": "http://hl7.org/fhir/StructureDefinition/ValueSet"
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},
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{
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"type": "MessageHeader",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-MessageHeader"
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},
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{
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"type": "Subscription",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Subscription"
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},
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{
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"type": "CapabilityStatement",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-CapabilityStatement"
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},
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{
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"type": "Task",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Task"
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},
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{
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"type": "ServiceRequest",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-ServiceRequest-Genomics"
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},
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{
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"type": "PractitionerRole",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-PractitionerRole-Genomics"
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},
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{
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"type": "Practitioner",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-Practitioner-Genomics"
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},
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{
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"type": "Organization",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-Organization-Genomics"
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},
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{
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"type": "DiagnosticReport",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-DiagnosticReport"
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},
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{
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"type": "FamilyMemberHistory",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-FamilyMemberHistory"
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},
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{
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"type": "Observation",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-Observation-Genomics"
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},
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{
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"type": "Patient",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-Patient-Genomics"
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},
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{
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"type": "Consent",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-Consent-Genomics"
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},
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{
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"type": "Condition",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-Condition-Genomics"
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},
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{
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"type": "ResearchSubject",
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"profile": "http://hl7.org/fhir/StructureDefinition/ResearchSubject"
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},
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{
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"type": "RelatedPerson",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-RelatedPerson"
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},
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{
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"type": "Specimen",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-Specimen-Genomics"
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},
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{
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"type": "Questionnaire",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Questionnaire"
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},
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{
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"type": "QuestionnaireResponse",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-QuestionnaireResponse"
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},
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{
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"type": "OperationDefinition",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-OperationDefinition"
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},
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{
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"type": "OperationOutcome",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-OperationOutcome"
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}
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]
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}
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]
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}

‎CodeSystem/CodeSystem-Genomics-business-status.json‎

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{
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"resourceType": "CodeSystem",
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"id": "959a0a2f-73e3-4c6e-8e99-babb6b3a4296",
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"url": "https://fhir.nhs.uk/CodeSystem/business-status-genomics",
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/identifier/CodeSystem",
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"value": "business-status-genomics"
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}
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],
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"version": "0.1.0",
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"name": "BusinessStatusGenomics",
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"title": "Business Status Genomics",
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"status": "draft",
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"date": "2022-11-25",
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"publisher": "NHS Digital",
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"contact": [
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{
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"name": "NHS Digital",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work"
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}
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]
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}
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],
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"description": "Business status for test order Tasks in genomics",
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"copyright": "Copyright © 2022 NHS Digital",
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"caseSensitive": true,
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"content": "complete",
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"concept": [
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{
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"code": "AwaitingSpecimen",
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"display": "AwaitingSpecimen"
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},
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{
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"code": "SpecimenReceived",
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"display": "Specimen Received"
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},
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{
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"code": "SpecimenProcessed",
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"display": "Specimen Processed"
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},
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{
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"code": "AnalysisInProgress",
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"display": "Analysis In Progress"
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},
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{
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"code": "VariantsIdentified",
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"display": "Variants Identified"
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},
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{
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"code": "InterpretationInProgress",
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"display": "Interpretation In Progress"
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},
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{
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"code": "DraftingReport",
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"display": "Drafting Report"
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}
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]
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}

‎CodeSystem/CodeSystem-Genomics-message-events.json‎

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{
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"resourceType": "CodeSystem",
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"id": "message-events-genomics",
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"url": "https://fhir.nhs.uk/CodeSystem/message-events-genomics",
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/identifier/CodeSystem",
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"value": "message-events-genomics"
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}
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],
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"version": "0.1.0",
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"name": "MessageEventsGenomics",
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"title": "Message Events Genomics",
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"status": "draft",
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"date": "2022-11-25",
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"publisher": "NHS Digital",
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"contact": [
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{
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"name": "NHS Digital",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work"
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}
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]
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}
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],
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"description": "Common messaging events for Genomics Test Orders and Reports.",
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"copyright": "Copyright © 2022 NHS Digital",
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"caseSensitive": true,
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"content": "complete",
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"concept": [
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{
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"code": "genomictestrequest",
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"display": "Genomic Test Request",
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"definition": "A Service Request bundle for ordering genomic tests"
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},
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{
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"code": "genomictestresponse",
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"display": "Genomic Test Response",
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"definition": "A Diagnostic Report bundle for test results"
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}
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]
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}

‎CodeSystem/CodeSystem-Genomics-organization-type.json‎

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{
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"resourceType": "CodeSystem",
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"id": "959a0a2f-73e3-4c6e-8e99-babb6b3a4296",
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"url": "https://fhir.nhs.uk/CodeSystem/organization-type-genomics",
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/identifier/CodeSystem",
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"value": "organization-type-genomics"
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}
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],
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"version": "0.1.0",
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"name": "OrganizationTypeGenomics",
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"title": "Organization Type Genomics",
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"status": "draft",
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"date": "2022-11-25",
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"publisher": "NHS Digital",
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"contact": [
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{
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"name": "NHS Digital",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work"
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}
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]
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}
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],
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"description": "Organization type for use in genomic test orders",
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"copyright": "Copyright © 2022 NHS Digital",
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"caseSensitive": true,
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"content": "complete",
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"concept": [
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{
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"code": "GLH",
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"display": "Genomic Lab Hub"
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},
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{
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"code": "GEL",
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"display": "Genomics England"
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},
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{
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"code": "LAB",
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"display": "Genomics Laboratory"
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}
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]
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}

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