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Merge pull request #5 from NHSDigital/Feature-Extensions-and-CodeSystems
Extensions and CodeSystems
2 parents 70aafb2 + 05a99bd commit 8d29ada

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‎Bundle/UKCore-Bundle-MichaelJonesRequest-Example_v3_message.json‎

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"resource": {
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"resourceType": "ServiceRequest",
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"id": "66c519dd-423f-4238-89c8-91c5be52f330",
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"extension": [
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{
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"url": "https://fhir.nhs.uk/StructureDefinition/Extension-Genomics-Coverage",
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"valueCoding": {
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"system": "https://fhir.nhs.uk/CodeSystem/coverage-genomics",
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"code": "NHS",
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"display": "NHS"
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}
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}
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],
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"identifier": [
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{
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"system": "https://www.christie.nhs.uk/ehr",

‎CapabilityStatement/CapabilityStatement-genomics-requirements.json‎

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},
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{
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"type": "RelatedPerson",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-RelatedPerson"
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-RelatedPerson-Genomics"
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},
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{
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"type": "Specimen",

‎CodeSystem/CodeSystem-Genomics-coverage.json‎

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{
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"resourceType": "CodeSystem",
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"url": "https://fhir.nhs.uk/CodeSystem/coverage-genomics",
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/identifier/CodeSystem",
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"value": "coverage-genomics"
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}
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],
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"version": "0.1.0",
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"name": "CoverageGenomics",
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"title": "Coverage Genomics",
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"status": "draft",
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"date": "2022-12-05",
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"publisher": "NHS Digital",
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"contact": [
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{
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"name": "NHS Digital",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work"
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}
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]
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}
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],
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"description": "Categories for coverage for ServiceReqeusts in genomics",
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"copyright": "Copyright © 2022 NHS Digital",
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"caseSensitive": true,
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"content": "complete",
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"concept": [
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{
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"code": "NHS",
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"display": "NHS"
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},
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{
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"code": "Private",
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"display": "Private"
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}
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]
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}

‎CodeSystem/CodeSystem-Genomics-nhsnumber-unavailable-reason.json‎

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{
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"resourceType": "CodeSystem",
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"url": "https://fhir.nhs.uk/CodeSystem/nhsnumber-unavailable-reason-genomics",
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/identifier/CodeSystem",
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"value": "nhsnumber-unavailable-reason"
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}
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],
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"version": "0.1.0",
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"name": "NHSNumberUnavailableReasonGenomics",
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"title": "NHSNumber Unavailable Reason Genomics",
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"status": "draft",
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"date": "2022-12-05",
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"publisher": "NHS Digital",
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"contact": [
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{
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"name": "NHS Digital",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work"
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}
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]
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}
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],
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"description": "Reason why an NHS number is unavailable",
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"copyright": "Copyright © 2022 NHS Digital",
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"caseSensitive": true,
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"content": "complete",
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"concept": [
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{
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"code": "NotKnown",
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"display": "NHS Number not known"
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},
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{
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"code": "Overseas",
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"display": "Overseas patient"
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}
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]
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}

‎CodeSystem/CodeSystem-Genomics-sample-state.json‎

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{
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"resourceType": "CodeSystem",
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"url": "https://fhir.nhs.uk/CodeSystem/sample-state-genomics",
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"identifier": [
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{
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"system": "https://fhir.nhs.uk/identifier/CodeSystem",
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"value": "sample-state-genomics"
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}
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],
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"version": "0.1.0",
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"name": "SampleStateGenomics",
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"title": "Sample State Genomics",
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"status": "draft",
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"date": "2022-12-05",
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"publisher": "NHS Digital",
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"contact": [
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{
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"name": "NHS Digital",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work"
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}
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]
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}
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],
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"description": "The type of sample, for use in Specimen resources in genomics",
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"copyright": "Copyright © 2022 NHS Digital",
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"caseSensitive": true,
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"content": "complete",
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"concept": [
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{
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"code": "ST",
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"display": "Solid tumour sample"
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},
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{
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"code": "LT",
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"display": "Liquid tumour sample"
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},
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{
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"code": "N",
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"display": "Normal"
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},
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{
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"code": "G",
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"display": "Germline sample"
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}
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]
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}

‎Consent/UKCore-Consent-MichaelJonesConsent-Example.json‎

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{
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"resourceType": "Consent",
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"id": "UKCore-Consent-MichaelJonesConsent-Example",
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"meta": {
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"profile": [
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"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Consent"
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]
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},
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"identifier": [
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{
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"system": "https://www.christie.nhs.uk/ehr",

‎NamingSystem/NamingSystem-Genomics-pedigree-number.json‎

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{
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"resourceType": "NamingSystem",
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"id": "genomics-pedigree-number",
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"name": "GenomicsPedigreeNumber",
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"status": "draft",
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"kind": "identifier",
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"date": "2022-12-05",
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"publisher": "NHS Digital",
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"responsible": "NHS Genomic Interop Programme",
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"description": "Clinical genetics no/pedigree number",
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"usage": "Patient's genetic/pedigree number which links their family.",
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"uniqueId": [
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{
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"type": "uri",
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"value": "https://fhir.nhs.uk/Id/genomics-pedigree-number",
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"preferred": true
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}
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]
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}

‎ServiceRequest/UKCore-ServiceRequest-MichaelJonesDYPDRequest-Example.json‎

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{
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"resourceType": "ServiceRequest",
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"id": "UKCore-ServiceRequest-MichaelJonesDYPDRequest-Example",
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"extension": [
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{
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"url": "https://fhir.nhs.uk/StructureDefinition/Extension-Genomics-Coverage",
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"valueCoding": {
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"system": "https://fhir.nhs.uk/CodeSystem/coverage-genomics",
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"code": "NHS",
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"display": "NHS"
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}
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}
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],
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"identifier": [
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{
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"system": "https://www.christie.nhs.uk/ehr",

‎StructureDefinition/Extension-Genomics-AdditionalContact.StructureDefinition.json‎

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{
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"resourceType": "StructureDefinition",
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"url": "https://fhir.nhs.uk/StructureDefinition/Extension-Genomics-AdditionalContact",
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"version": "0.1.0",
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"name": "GenomicsAdditionalContact",
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"status": "draft",
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"date": "2022-12-05",
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"publisher": "NHS Digital",
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"fhirVersion": "4.0.1",
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"kind": "complex-type",
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"abstract": false,
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"context": [
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{
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"type": "element",
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"expression": "ServiceRequest"
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}
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],
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"type": "Extension",
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"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
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"derivation": "constraint",
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"differential": {
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"element": [
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{
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"id": "Extension",
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"path": "Extension",
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"short": "Additional contacts for the ServiceRequest",
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"definition": "To know who additionally should be contacted with questions or clinical results and how they should be contacted."
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},
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{
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"id": "Extension.url",
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"path": "Extension.url",
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"fixedUri": "https://fhir.nhs.uk/fhir/StructureDefinition/Extension-Genomics-AdditionalContact"
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},
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{
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"id": "Extension.value[x]",
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"path": "Extension.value[x]",
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"min": 1,
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"type": [
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{
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"code": "Reference",
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"targetProfile": [
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"https://fhir.nhs.uk/StructureDefinition/NHSDigital-PractitionerRole-Genomics"
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],
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"aggregation": [
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"referenced",
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"bundled"
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]
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}
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]
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}
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]
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}
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}

‎StructureDefinition/Extension-Genomics-BirthSex.StructureDefinition.json‎

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{
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"resourceType": "StructureDefinition",
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"id": "Extension-Genomics-BirthSex",
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"url": "https://fhir.nhs.uk/StructureDefinition/Extension-Genomics-BirthSex",
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"version": "0.1.0",
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"name": "GenomicsBirthSex",
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"title": "Genomics BirthSex",
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"status": "draft",
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"date": "2022-12-05",
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"publisher": "NHS Digital",
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"contact": [
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{
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"name": "NHS Digital",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work",
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"rank": 1
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}
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]
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}
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],
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"description": "An extension to support the patient's phenotypic sex at birth.",
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"purpose": "This extension extends the Patient resource to support the exchange of the patient's phenotypic sex at birth information, as a Codeable Concept, which is currently not supported by the FHIR standard.",
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"copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"fhirVersion": "4.0.1",
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"mapping": [
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{
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"identity": "rim",
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"uri": "http://hl7.org/v3",
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"name": "RIM Mapping"
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}
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],
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"kind": "complex-type",
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"abstract": false,
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"context": [
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{
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"type": "element",
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"expression": "RelatedPerson"
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}
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],
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"type": "Extension",
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"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
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"derivation": "constraint",
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"differential": {
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"element": [
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{
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"id": "Extension",
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"path": "Extension",
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"short": "An extension to support the patient's phenotypic sex at birth.",
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"definition": "An extension to support the patient's phenotypic sex at birth.",
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"max": "1"
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},
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{
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"id": "Extension.url",
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"path": "Extension.url",
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"fixedUri": "https://fhir.nhs.uk/StructureDefinition/Extension-Genomics-BirthSex"
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},
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{
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"id": "Extension.value[x]",
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"path": "Extension.value[x]",
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"short": "A code that defines a patient's phenotypic sex at birth.",
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"definition": "A code that defines a patient's phenotypic sex at birth.",
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"min": 1,
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"type": [
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{
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"code": "code"
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}
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],
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"binding": {
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"strength": "required",
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"valueSet": "https://fhir.hl7.org.uk/ValueSet/UKCore-BirthSex"
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}
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}
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]
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}
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}

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