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KazeemHamzatKazeemHamzat
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Feature-IOPS-2309-CPGC-Non-WGS-Solid-Tumour-Scenario (#59)
* Create-Test-Order-for-NonWGSTestOrderForm-CancerSolidTumor Create-Test-Order-for-NonWGSTestOrderForm-CancerSolidTumor * Update Specimen-CancerSolidTumor-Example Update Specimen-CancerSolidTumor-Example * Re-aligning PractitionerRole-Examples Re-aligning PractitionerRole-Examples * Add Task (Rejection & Forward) Add Task (Rejection & Forward) * Fix File Name too long TaskTestOrderRejected Fix File Name too long for NonWGSRareDiseaseTestOrderRejected * Update Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example.json Fix Bundle References * Update Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example.json Fix Bundle References * Update ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example.json Fix Bundle Reference * Remove Specimen from Bundle Remove Specimen from Bundle to avoid validation error on CodeSystem:https://fhir.hl7.org.uk/CodeSystem/UKCore-BiopsyState" * Update SR References Update SR References * Update to main Mapping on SR profile * Add OBS-TumorType & Neoplastic Cell Add OBS-TumorType & Neoplastic Cell, * Update OBS-NeoplasticCell Update OBS-NeoplasticCell * Add Task Resources Added Task Resources for requesting and accepting Additional Samples * Add SR Updated for Additional Details and Samples Add SR Updated for Additional Details and Samples * Update OBS Switching Cellularity and Approximate Neoplastic cell to text * Add Provenance Resource Added Provenance to show history of when sample was provided.
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‎Provenance/Provenance-NonWGSTestOrderFormUpdated-SolidTumor-Example.json‎

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{
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"resourceType": "Provenance",
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"id": "Provenance-NonWGSTestOrderFormUpdated-SolidTumor-Example",
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"target": [
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{
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-SolidTumor-Example"
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}
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],
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"recorded": "2023-08-08T15:43:00Z",
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"reason": [
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{
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/v3-ActReason",
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"code": "TREAT",
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"display": "treatment"
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}
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]
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}
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],
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"activity": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/v3-DataOperation",
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"code": "UPDATE",
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"display": "revise"
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}
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]
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},
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"agent": [
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{
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"type": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/provenance-participant-type",
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"code": "author",
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"display": "Author"
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}
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]
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},
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"who": {
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"reference": "PractitionerRole/PractitionerRole-TestClinicalScientist-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/sds-user-id",
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"value": "9999999997"
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}
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}
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}
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],
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"entity": [
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{
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"role": "source",
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"what": {
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example"
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}
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}
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],
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"signature": [
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{
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"type": [
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{
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"system": "urn:iso-astm:E1762-95:2013",
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"code": "1.2.840.10065.1.12.1.15",
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"display": "Addendum Signature"
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}
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],
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"when": "2023-08-08T15:43:00Z",
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"who": {
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"reference": "PractitionerRole/PractitionerRole-TestClinicalScientist-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/sds-user-id",
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"value": "9999999997"
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}
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},
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"data": "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"
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}
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]
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}

‎ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-SolidTumor-Example.json‎

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{
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"text": "Additional portion of Sample X was provided."
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}
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],
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"relevantHistory": [
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{
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"reference": "Provenance/Provenance-NonWGSTestOrderFormUpdated-SolidTumor-Example"
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}
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]
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}

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