Moving from Specimen extensions to BodyStructure

Author: omarisgreat

BodyStructure/UKCore-BodyStructure-PancreaticTumour-Example.json

@@ -0,0 +1,39 @@
+{
+	"resourceType": "BodyStructure",
+	"id": "UKCore-BodyStructure-PancreaticTumour-Example",
+	"morphology": {
+		"coding": [
+			{
+				"system": "http://snomed.info/sct",
+				"code": "53618008",
+				"display": "Pancreatoblastoma"
+			}
+		]
+	},
+	"location": {
+		"coding": [
+			{
+				"system": "http://snomed.info/sct",
+				"code": "15776009",
+				"display": "Pancreatic structure"
+			}
+		]
+	},
+	"locationQualifier": [
+		{
+			"coding": [
+				{
+					"system": "http://snomed.info/sct",
+					"code": "261183002",
+					"display": "Upper"
+				}
+			]
+		}
+	],
+	"patient": {
+		"identifier": {
+			"system": "https://fhir.nhs.uk/Id/nhs-number",
+			"value": "9999999999"
+		}
+	}
+}

CapabilityStatement/CapabilityStatement-genomics-requirements.json

@@ -105,7 +105,7 @@
                 },
                 {
                     "type": "FamilyMemberHistory",
-                    "profile": "http://hl7.org/fhir/StructureDefinition/FamilyMemberHistory"
+                    "profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-FamilyMemberHistory"
                 },
                 {
                     "type": "Observation",
@@ -150,6 +150,10 @@
                 {
                     "type": "OperationOutcome",
                     "profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-OperationOutcome"
+                },
+                {
+                    "type": "BodyStructure",
+                    "profile": "http://hl7.org/fhir/StructureDefinition/BodyStructure"
                 }
             ]
         }

MessageDefinition/MessageDefinition-genomictestrequest.json

@@ -60,6 +60,12 @@
             "profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-RelatedPerson",
             "min": 0,
             "max": "*"
+        },
+        {
+            "code": "BodyStructure",
+            "profile": "http://hl7.org/fhir/StructureDefinition/BodyStructure",
+            "min": 0,
+            "max": "*"
         }
     ]
 }

StructureDefinition/Extension-Genomics-Morphology.StructureDefinition.json

@@ -53,38 +53,6 @@
         ],
         "isModifier": false
       },
-      {
-        "id": "Specimen.extension:topology",
-        "path": "Specimen.extension",
-        "sliceName": "topology",
-        "min": 0,
-        "max": "1",
-        "type": [
-          {
-            "code": "Extension",
-            "profile": [
-              "https://fhir.nhs.uk/StructureDefinition/mcode-body-location-qualifier"
-            ]
-          }
-        ],
-        "isModifier": false
-      },
-      {
-        "id": "Specimen.extension:morphology",
-        "path": "Specimen.extension",
-        "sliceName": "morphology",
-        "min": 0,
-        "max": "1",
-        "type": [
-          {
-            "code": "Extension",
-            "profile": [
-              "https://fhir.nhs.uk/StructureDefinition/mcode-histology-morphology-behavior"
-            ]
-          }
-        ],
-        "isModifier": false
-      },
       {
         "id": "Specimen.identifier.assigner",
         "path": "Specimen.identifier.assigner",