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GraphDefinition for Test Result
also includes minor changes to test order GraphDefinition and DocumentReference (based on updated IG guidance)
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3 files changed

Lines changed: 192 additions & 3 deletions

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‎DocumentReference/DocumentReference-PharmCAT-Example.json‎

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],
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"context": {
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"related": [
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{
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"reference": "DiagnosticReport/DiagnosticReport-AnitaLamberts-Example"
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},
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{
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"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-NewFollowupTest-Example"
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},

‎GraphDefinition/GraphDefinition-Genomics-Test-Order.json‎

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]
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}
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]
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},
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{
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"description": "Specimen resources referencing this ServiceRequest",
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"min": 0,
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"max": "*",
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"target": [
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{
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"type": "Specimen",
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"params": "request={ref}"
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}
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]
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}
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]
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}

‎GraphDefinition/GraphDefinition-Genomics-Test-Result.json‎

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{
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"resourceType": "GraphDefinition",
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"id": "GraphDefinition-Genomics-Test-Result",
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"url": "https://fhir.nhs.uk/GraphDefinition/genomics-test-result",
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"name": "GenomicsTestResult",
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"status": "draft",
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"date": "2024-08-09",
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"publisher" : "NHS England",
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"description": "GraphDefinition for defining and retrieving the full set of resources relevant to a Genomic Test Result (based on the Genomics Reporting Genomic-Report profile)",
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"start": "DiagnosticReport",
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"link": [
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{
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"path": "DiagnosticReport.extension.valueReference",
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"sliceName": "recommended-action",
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"description": "Further actions recommended by the report",
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"min": 0,
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"max": "*",
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"target": [
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{
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"type": "Task"
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}
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]
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},
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{
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"path": "DiagnosticReport.extension.valueReference",
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"sliceName": "genomic-study",
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"description": "The set of analyses performed to generate/analyse the genomic data",
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"min": 0,
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"max": "*",
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"target": [
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{
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"type": "Procedure",
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"link": [
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{
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"path": "Procedure.extension.valueReference",
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"sliceName": "genomic-study-analysis",
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"description": "Component of genomic study",
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"min": 0,
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"max": "*",
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"target": [
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{
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"type": "Procedure"
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}
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]
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}
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]
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}
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]
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},
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{
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"path": "DiagnosticReport.extension.valueReference",
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"sliceName": "supporting-info",
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"description": "Supporting Info references, used to capture clinical information and references to Genomic Data Files",
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"min": 0,
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"max": "*",
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"target": [
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{
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"type": "DocumentReference"
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},
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{
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"type": "Resource"
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}
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]
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},
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{
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"path": "DiagnosticReport.basedOn",
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"description": "Link to request this DiagnosticReport is in fulfillment of",
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"min": 1,
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"max": 1,
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"target": [
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{
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"type": "ServiceRequest"
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}
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]
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},
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{
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"path": "DiagnosticReport.subject",
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"description": "Link to the patient the report is concerning",
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"min": 1,
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"max": 1,
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"target": [
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{
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"type": "Patient",
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}
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]
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},
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{
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"path": "DiagnosticReport.specimen",
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"description": "Link to the specimens used during testing to generate the report",
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"min": 0,
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"max": "*",
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"target": [
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{
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"type": "Specimen",
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"link": [
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{
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"path": "Specimen.subject",
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"description": "Link to the patient the specimen is from",
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"min": 1,
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"max": 1,
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"target": [
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{
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"type": "Patient"
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}
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]
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},
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{
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"path": "Specimen.parent",
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"description": "Link to parent specimen resource",
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"min": 0,
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"max": 1,
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"target": [
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{
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"type": "Specimen"
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}
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]
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},
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{
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"path": "Specimen.collection.collector",
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"description": "Link to collector of the specimen",
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"min": 0,
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"max": 1,
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"target": [
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{
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"type": "PractitionerRole"
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}
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]
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},
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{
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"path": "Specimen.collection.bodySite.extension.valueReference",
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"sliceName": "bodySiteReference",
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"description": "Link to the body structure detailing the morphology and topography of the specimen",
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"min": 0,
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"max": 1,
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"target": [
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{
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"type": "BodyStructure"
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}
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]
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}
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]
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}
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]
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},
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{
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"path": "DiagnosticReport.result",
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"description": "Links to Observations forming the results reported in the DiagnosticReport",
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"min": 0,
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"max": "*",
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"target": [
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{
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"type": "Observation",
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"link": [
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{
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"path": "Observation.performer",
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"description": "Optional link to actor who performed the observation (could be Patient, PractitionerRole or RelatedPerson)",
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"min": 0,
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"max": 1,
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"target": [
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{
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"type": "Resource"
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}
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]
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},
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{
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"path": "Observation.hasMember",
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"description": "Optional link to observation if parent observation is a panel",
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"min": 0,
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"max": "*",
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"target": [
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{
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"type": "Observation"
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}
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]
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}
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]
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}
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]
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}
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]
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}

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