diff --git a/.gitignore b/.gitignore index ef957cf7..4b6b2e59 100644 --- a/.gitignore +++ b/.gitignore @@ -26,4 +26,6 @@ yarn.lock docusaurus.config.js .Rproj.user knowledge_base.Rproj -.vscode \ No newline at end of file +.vscode + +article_count.md \ No newline at end of file diff --git a/README.md b/README.md index 4797f99a..75536352 100644 --- a/README.md +++ b/README.md @@ -4,14 +4,15 @@ This repo is the core of the [NFDI4Chem knowledge base](https://knowledgebase.nfdi4chem.de). -## Documentation +[![Crowdin](https://badges.crowdin.net/nfdi4chem-knowledge-base/localized.svg)](https://crowdin.com/project/nfdi4chem-knowledge-base) [![Localisation Workflow](https://github.com/NFDI4Chem/knowledge_base/actions/workflows/localisation.yml/badge.svg)](https://github.com/NFDI4Chem/knowledge_base/actions/workflows/localisation.yml) -- [Getting started](./readme/getting_started.md) -- [Localisation](./readme/localisation.md) -- [Advanced stuff](./readme/advanced.md) -- [Local testing](./readme/testing.md) +## Documentation -[![Crowdin](https://badges.crowdin.net/nfdi4chem-knowledge-base/localized.svg)](https://crowdin.com/project/nfdi4chem-knowledge-base) [![Localisation Workflow](https://github.com/NFDI4Chem/knowledge_base/actions/workflows/localisation.yml/badge.svg)](https://github.com/NFDI4Chem/knowledge_base/actions/workflows/localisation.yml) +* [Getting started](./readme/getting_started.md) +* [Localisation](./readme/localisation.md) +* [Advanced stuff](./readme/advanced.md) +* [Custom components](./readme/custom.md) +* [Local testing](./readme/testing.md) ## Acknowledgments diff --git a/docs/00_intro/00_intro.mdx b/docs/00_intro/00_intro.mdx index 68a15abc..e71e7892 100644 --- a/docs/00_intro/00_intro.mdx +++ b/docs/00_intro/00_intro.mdx @@ -4,10 +4,14 @@ slug: "/intro" id: "intro" --- -import useBaseUrl from '@docusaurus/useBaseUrl'; -import IntroButton from '@site/src/components/IntroButton.js'; +import FeatureButton from "@site/src/components/features/FeatureButton.js"; +import FloatImage from "@site/src/components/commons/FloatImage.js"; -Data LifeCycle + The NFDI4Chem knowledge base provides information and recommendations to digitalise all key steps of chemical research to support scientists in their efforts to collect, store, process, analyse, publish, and reuse research data. This knowledge base is inspired by [RDMkit](https://rdmkit.elixir-europe.org/index.html) but has been tailored specifically towards Chemists as end-users. @@ -16,13 +20,13 @@ Actions to [promote Open Science and Research Data Management](https://riojourna ## Why is RDM important for chemistry? :::danger Notice: -Research Data Management in chemistry is currently not systematically organised and individual solutions of single institutions lead to low visibility, accessibility, and usability of research results. The added value of preserving and researching scientific data in chemistry is particularly high because the significance of the data is often immortal, hence, older data can be reused for current investigations. In most cases, it is even mandatory to be able to access older data, since experimental data or complex simulation data in particular can only be regenerated with great effort. +Research Data Management in chemistry is currently not systematically organised and individual solutions of single institutions lead to low visibility, accessibility, and usability of research results. The added value of preserving and researching scientific data in chemistry is particularly high because the significance of the data is often immortal, hence, older data can be reused for current investigations. In most cases, it is even mandatory to be able to access older data, since experimental data or complex simulation data in particular can only be regenerated with great effort. ::: Main motivations for RDM in chemistry are: - to prevent the loss of data and ensure data security -- to warrant long-term availability of research data +- to warrant long-term availability of research data - to accelerate retrieval of data and information - to enhance transparency, reproducibility allow verifiability of research findings - to boost sustainability by saving time and resources @@ -40,28 +44,48 @@ The knowledge base offers different points of entry that help you in navigating The domain pages present an exemplary workflow for different chemistry disciplines along the research data life cycle. Multiple domains are illustrated in a user profile. Guidelines are provided for all digitisation steps involved and domain-specific best practices for FAIR data are given. Find out how to apply good RDM and FAIR science in the context of your own specific discipline! - + ### Role-specific information The role pages focus on the motivation for role-specific requirements and answer the questions why RDM is important and how it can be implemented. Get a fast impression of all important RDM information related to your role! - + ### Handling data The handling data section explains common problems and challenges regarding RDM. Problematic aspects of data handling are considered, starting with the creation of data management plans, data organisation and data documentation. Moreover, aspects on data storage and archiving are also covered. - + ### Smartlab To enable fully digital workflows in chemistry, the development and provision of a modular virtual laboratory environment with concepts, services and software (smartlab) is essential. Electronic lab notebooks are an important part of the smartlab, as well as integration of analytical instrumentation and data transfer to repositories. - + ### Data Publishing -In this category on data publishing you will find all the important information on the topic of data publishing. This includes the motivation to publish research data, paths to publish data, recommendations for research data repositories to be used, best practices and aspects of machine actionability. +In this category on data publishing you will find all the important information on the topic of data publishing. This includes the motivation to publish research data, paths to publish data, recommendations for research data repositories to be used, best practices and aspects of machine actionability. - + diff --git a/docs/00_intro/20_data_life_cycle.mdx b/docs/00_intro/20_data_life_cycle.mdx index c5baba99..dc2d574f 100644 --- a/docs/00_intro/20_data_life_cycle.mdx +++ b/docs/00_intro/20_data_life_cycle.mdx @@ -3,13 +3,17 @@ title: "Data Life Cycle" slug: "/data_life_cycle" --- -import useBaseUrl from '@docusaurus/useBaseUrl'; +import FloatImage from "@site/src/components/commons/FloatImage.js"; # Research Data Life Cycle ## Introduction -Data LifeCycle + In scientific work, the assurance of [good research practice](https://doi.org/10.5281/zenodo.3923602) is the highest imperative. @@ -33,17 +37,16 @@ Moreover, **quality assurance** is important at this phase. Check, validate and ## Phase 4: Analysis -In the 4th phase, as the name suggests, the focus is on the **analysis and interpretation of the data**. After analysing the data, the data should be evaluated. You should also consider **sharing the data** with colleagues in a closed and secure environment like on a project or working group level. Secure environments for sharing data are often provided by universities or federal states through Sync&share solutions. Consult your local research data team about this. - -Before sharing data, you should check whether the data is subject to **copyright protection or other protective rights**. +In the 4th phase, as the name suggests, the focus is on the **analysis and interpretation of the data**. After analysing the data, the data should be evaluated. You should also consider **sharing the data** with colleagues in a closed and secure environment like on a project or working group level. Secure environments for sharing data are often provided by universities or federal states through Sync&share solutions. Consult your local research data team about this. +Before sharing data, you should check whether the data is subject to **copyright protection or other protective rights**. ## Phase 5: Disclosure/ Publication -During this exchange and the associated reflections on the data, you should think about archiving and using the data in scientific publications. If you are not aware of any **criteria for archiving** and no criteria are specified in your working group or institute, decision-making guides such as the [“5 steps to decide what data to keep”](https://www.dcc.ac.uk/guidance/how-guides/five-steps-decide-what-data-keep) outlined by the DCC can help. Based on the established criteria, it is determined which of the collected raw data should be archived and which should be deliberately deleted. +During this exchange and the associated reflections on the data, you should think about archiving and using the data in scientific publications. If you are not aware of any **criteria for archiving** and no criteria are specified in your working group or institute, decision-making guides such as the [“5 steps to decide what data to keep”](https://www.dcc.ac.uk/guidance/how-guides/five-steps-decide-what-data-keep) outlined by the DCC can help. Based on the established criteria, it is determined which of the collected raw data should be archived and which should be deliberately deleted. In addition to the criteria, the migration of the data into **suitable [formats](/docs/format_standards) and onto suitable media** is important for archiving the data. In this step, the data should again be enriched with metadata so that it can be understood in the future without further knowledge about the data. -In addition to archiving, the [publication](/docs/data_publishing) of the data plays a special role. Many research funders expect the data to be published if there are no special reasons not to do so, such as a non-disclosure agreement or the inclusion of personal data. A **chemistry-specific or chemistry-related [repository](/docs/repositories)** such as the [Chemotion Repository](https://www.chemotion-repository.net/), [NOMAD](https://nomad-lab.eu/services/repo-arch), or [MassBank](https://massbank.eu/MassBank/) is recommended for the publication of data. An overview of repositories can be found, for example, at [re3data.org](https://www.re3data.org/) or [fairsharing.org](https://fairsharing.org/). re3data.org allows you to filter repositories according to certain criteria such as the assignment of a persistent identifier or access. +In addition to archiving, the [publication](/docs/data_publishing) of the data plays a special role. Many research funders expect the data to be published if there are no special reasons not to do so, such as a non-disclosure agreement or the inclusion of personal data. A **chemistry-specific or chemistry-related [repository](/docs/repositories)** such as the [Chemotion Repository](https://www.chemotion-repository.net/), [NOMAD](https://nomad-lab.eu/services/repo-arch), or [MassBank](https://massbank.eu/MassBank/) is recommended for the publication of data. An overview of repositories can be found, for example, at [re3data.org](https://www.re3data.org/) or [fairsharing.org](https://fairsharing.org/). re3data.org allows you to filter repositories according to certain criteria such as the assignment of a persistent identifier or access. Data publishing often takes place at certain milestones, for example, in combination with a text publication or at the end of a project. The **final version of the data management plan** is also required at the end of a project. ## Phase 6: Re-use @@ -52,7 +55,7 @@ In the re-use phase, you or others conduct further research on how the data can In order to return these data to the cycle, it is important that these data are described in detail with metadata, that proper documentation has been carried out in the form of a DMP, and that the data are citable. -What is the potential of your data? +What is the potential of your data? ## Sources and further information @@ -61,4 +64,4 @@ What is the potential of your data? - [Review of data management lifecycle models](https://researchportal.bath.ac.uk/en/publications/review-of-data-management-lifecycle-models) - [DCC: 5 steps to decide what data to keep](https://www.dcc.ac.uk/guidance/how-guides/) - German: [Überblick zum Management von Forschungsdaten (FDM I) = Research Data Management - An Overview](https://doi.org/10.18154/RWTH-2019-06489) -- German: [Forschungsdaten.info: Informieren und Planen](https://www.forschungsdaten.info/themen/informieren-und-planen/datenlebenszyklus/ ) +- German: [Forschungsdaten.info: Informieren und Planen](https://www.forschungsdaten.info/themen/informieren-und-planen/datenlebenszyklus/) diff --git a/docs/10_domains/00_domain_guide.mdx b/docs/10_domains/00_domain_guide.mdx index fc6895b0..ba204b99 100644 --- a/docs/10_domains/00_domain_guide.mdx +++ b/docs/10_domains/00_domain_guide.mdx @@ -4,7 +4,8 @@ slug: "/domain_guide" id: "domains_guide" --- -import N4CFeatures from '/src/components/N4CFeatures.js'; +import Features from "@site/src/components/features/Features"; +import domains from "@site/src/data/domains"; Looking for information on managing research data in chemistry? Choose your chemical domain and find discipline-specific help on research data management. @@ -18,8 +19,8 @@ The domain-specific profiles provide an overview of the individual RDM steps. Th - data producing methods (including a table with recommendations on interoperable open file formats) - data analysis - publication of research data -::: + ::: Click on a button below to get started with your chemical domain. The domain-specific profiles will be continuously updated based on new developments and feedback. - + diff --git a/docs/10_domains/10_analytical_chemistry.mdx b/docs/10_domains/10_analytical_chemistry.mdx index e20ec5b2..24eb7c68 100644 --- a/docs/10_domains/10_analytical_chemistry.mdx +++ b/docs/10_domains/10_analytical_chemistry.mdx @@ -4,7 +4,7 @@ nfdi4chem-id: dac slug: "/analytical_chemistry" --- -import { LbeChip } from "@site/src/components/lbe/LbeElements.js"; +import LbeChip from "@site/src/components/commons/LbeChip.js"; import ElnFinder from "@site/src/components/eln/ElnFinder.js"; @@ -44,12 +44,12 @@ General data repositories include [Zenodo](https://zenodo.org/) or [RADAR4Chem]( For method-specific data, several specialised repositories are available. A few examples include: -- [MassBank EU](https://massbank.eu/) - A field-specific ecosystem of databases and tools for mass spectrometry reference spectra. -- [MetaboLights](https://www.ebi.ac.uk/metabolights/) - A repository for metabolomic studies. -- [nmrXiv](https://nmrxiv.org/) - A repository for NMR data. +- [MassBank EU](https://massbank.eu/) + A field-specific ecosystem of databases and tools for mass spectrometry reference spectra. +- [MetaboLights](https://www.ebi.ac.uk/metabolights/) + A repository for metabolomic studies. +- [nmrXiv](https://nmrxiv.org/) + A repository for NMR data. This list is not exhaustive, and there may be other repositories that are more suitable for your data. diff --git a/docs/10_domains/20_electrochemistry.mdx b/docs/10_domains/20_electrochemistry.mdx index 9e32bf01..de2f790b 100644 --- a/docs/10_domains/20_electrochemistry.mdx +++ b/docs/10_domains/20_electrochemistry.mdx @@ -3,7 +3,8 @@ title: "Electrochemistry" slug: "/electrochemistry" --- -import { LbeChip } from "@site/src/components/lbe/LbeElements.js"; +import LbeChip from "@site/src/components/commons/LbeChip.js"; + import ElnFinder from "@site/src/components/eln/ElnFinder.js"; diff --git a/docs/10_domains/30_pharmaceutical_chemistry.mdx b/docs/10_domains/30_pharmaceutical_chemistry.mdx index 1e8efc59..6174a2a0 100644 --- a/docs/10_domains/30_pharmaceutical_chemistry.mdx +++ b/docs/10_domains/30_pharmaceutical_chemistry.mdx @@ -3,7 +3,8 @@ title: "Medicinal / Pharmaceutical Chemistry" slug: "/pharmaceutical_chemistry" --- -import { LbeChip } from "@site/src/components/lbe/LbeElements.js"; +import LbeChip from "@site/src/components/commons/LbeChip.js"; + import ElnFinderPharm from "@site/src/components/eln/ElnFinderPharm.js"; diff --git a/docs/10_domains/40_physical_chemistry.mdx b/docs/10_domains/40_physical_chemistry.mdx index 3e54fc9f..92b9d4d5 100644 --- a/docs/10_domains/40_physical_chemistry.mdx +++ b/docs/10_domains/40_physical_chemistry.mdx @@ -3,7 +3,8 @@ title: "Physical and Computational Chemistry" slug: "/physical_chemistry" --- -import { LbeChip } from "@site/src/components/lbe/LbeElements.js"; +import LbeChip from "@site/src/components/commons/LbeChip.js"; + import ElnFinder from "@site/src/components/eln/ElnFinder.js"; diff --git a/docs/10_domains/60_synthetic_chemistry.mdx b/docs/10_domains/60_synthetic_chemistry.mdx index c055d04b..a5cdfb5d 100644 --- a/docs/10_domains/60_synthetic_chemistry.mdx +++ b/docs/10_domains/60_synthetic_chemistry.mdx @@ -4,7 +4,8 @@ nfdi4chem-id: dsoic slug: "/synthetic_chemistry" --- -import { LbeChip } from "@site/src/components/lbe/LbeElements.js"; +import LbeChip from "@site/src/components/commons/LbeChip.js"; + import ElnFinder from "@site/src/components/eln/ElnFinder.js"; diff --git a/docs/20_role/00_role_guide.mdx b/docs/20_role/00_role_guide.mdx index 5e854c68..0ae2a7d6 100644 --- a/docs/20_role/00_role_guide.mdx +++ b/docs/20_role/00_role_guide.mdx @@ -4,7 +4,8 @@ slug: "/role_guide" id: "role_guide" --- -import N4CFeatures from '/src/components/N4CFeatures.js'; +import Features from "@site/src/components/features/Features"; +import roles from "@site/src/data/roles"; Looking for information on managing research data in chemistry? Choose your role and find solutions for role-specific data management issues. @@ -14,8 +15,8 @@ The role pages provide an overview of the individual RDM steps. The following to - motivation - how to start - what RDM aspects are particularly relevant to your role -::: + ::: Click on a button below to get started with your role. - \ No newline at end of file + diff --git a/docs/20_role/10_research_group_leader.mdx b/docs/20_role/10_research_group_leader.mdx index 114308c4..6402684d 100644 --- a/docs/20_role/10_research_group_leader.mdx +++ b/docs/20_role/10_research_group_leader.mdx @@ -3,7 +3,7 @@ title: "Research Group Leader" slug: "/research_group_leader" --- -import useBaseUrl from "@docusaurus/useBaseUrl"; +import FloatImage from "@site/src/components/commons/FloatImage.js"; :::info Applies to: This article applies to research group leaders, who plan to organise the RDM of their group. @@ -11,14 +11,10 @@ This article applies to research group leaders, who plan to organise the RDM of ## Motivation -Data LifeCycle As research group leader, you are responsible for the [research data organisation](/docs/data_organisation) of your group. Many research institutions and also most funding institutions require or give internal RDM guidelines (e.g. [DFG checklist](https://www.dfg.de/download/pdf/foerderung/grundlagen_dfg_foerderung/forschungsdaten/forschungsdaten_checkliste_de.pdf), BMBF, EU guidelines) and recommend the set-up of [data management plans](/docs/dmp) in order to ensure that the data are archived in a [FAIR](/docs/fair) (**F**indable, **A**ccessible, **I**nteroperable, **R**e-usable) manner. Many funding institutions encourage or even enforce the [publication](/docs/data_publishing) of FAIR data. @@ -42,13 +38,13 @@ Of all chemists, 60 % work synthetically. There are many advantages of using t :::tip Advantages of Chemotion -- Free and transparent [open source software](https://github.com/ComPlat/chemotion_ELN) -- Capturing data directly from the experiment planning phase -- Experimental reports for publications/theses automatically generated by the software -- Improving collaboration and data exchange within the group -- Seamless export of [FAIR](/docs/fair) and citable records to the [Chemotion Repository](https://www.chemotion-repository.net/welcome). -- Integration of [SciFinder](https://www.cas.org/solutions/cas-scifinder-discovery-platform/cas-scifinder) search -- Many spectra can be directly analysed in the Chemotion environment using [ChemSpectra](https://eln.chemotion.net/chemspectra-editor) (including a plausibility check for NMR spectra) +- Free and transparent [open source software](https://github.com/ComPlat/chemotion_ELN) +- Capturing data directly from the experiment planning phase +- Experimental reports for publications/theses automatically generated by the software +- Improving collaboration and data exchange within the group +- Seamless export of [FAIR](/docs/fair) and citable records to the [Chemotion Repository](https://www.chemotion-repository.net/welcome). +- Integration of [SciFinder](https://www.cas.org/solutions/cas-scifinder-discovery-platform/cas-scifinder) search +- Many spectra can be directly analysed in the Chemotion environment using [ChemSpectra](https://eln.chemotion.net/chemspectra-editor) (including a plausibility check for NMR spectra) **When running your own Chemotion instance, you remain in control of your own data** diff --git a/docs/20_role/20_research_group_member.mdx b/docs/20_role/20_research_group_member.mdx index 46d77b4e..ca1c8b6d 100644 --- a/docs/20_role/20_research_group_member.mdx +++ b/docs/20_role/20_research_group_member.mdx @@ -5,7 +5,7 @@ slug: "/research_group_member" # Research Group Member -import useBaseUrl from "@docusaurus/useBaseUrl"; +import FloatImage from "@site/src/components/commons/FloatImage.js"; :::info Applies to: This article applies to research group members (PhD students, Postdocs and other scientists), who are generating scientific data. @@ -17,13 +17,10 @@ As a research group member, you are the one who is doing the actual research. Th ## Data handling -Data LifeCycle In recent years, many new digital tools have been developed to support researchers with their RDM needs. The technical possibilities are briefly explained below. For more details, please refer to the linked related chapters. If you want to learn more about domain-specific data production methods, have a look at the [domain-specific profiles](/docs/role_guide). @@ -36,16 +33,16 @@ The use of an ELN for data handling has clear advantages (see [above](#data-hand :::tip Advantages of Chemotion -- [Data life cycle](/docs/data_life_cycle) fully covered—from experiment planning to publication -- Drawing chemical structures—automatic calculation of quantities and yields -- Many spectra can be directly analysed in the Chemotion environment using ChemSpectra -- Experimental information for the experimental section of theses or publications can be generated and exported by the software—no manual peak listing required -- A plausibility check is available for NMR spectra -- SciFinder search is directly integrated -- Building an internal database—advancing collaboration and data exchange in the group. -- Seamless export from ELN to repository as a FAIR data deposit with a [persistent identifier (DOI)](/docs/pid) for each molecule -- User management—access rights, sharing, and syncing. -- Academic version is free of charge +- [Data life cycle](/docs/data_life_cycle) fully covered—from experiment planning to publication +- Drawing chemical structures—automatic calculation of quantities and yields +- Many spectra can be directly analysed in the Chemotion environment using ChemSpectra +- Experimental information for the experimental section of theses or publications can be generated and exported by the software—no manual peak listing required +- A plausibility check is available for NMR spectra +- SciFinder search is directly integrated +- Building an internal database—advancing collaboration and data exchange in the group. +- Seamless export from ELN to repository as a FAIR data deposit with a [persistent identifier (DOI)](/docs/pid) for each molecule +- User management—access rights, sharing, and syncing. +- Academic version is free of charge **When running your own Chemotion instance, you keep control of your data.** diff --git a/docs/20_role/50_core_facility_manager.mdx b/docs/20_role/50_core_facility_manager.mdx index bbfe2c6f..ad9cc659 100644 --- a/docs/20_role/50_core_facility_manager.mdx +++ b/docs/20_role/50_core_facility_manager.mdx @@ -3,7 +3,7 @@ title: "Core facility manager" slug: "/core_facility_manager" --- -import useBaseUrl from "@docusaurus/useBaseUrl"; +import FloatImage from "@site/src/components/commons/FloatImage.js"; :::info Applies to: This article applies to core facility managers and heads of analytical service units. @@ -11,11 +11,10 @@ This article applies to core facility managers and heads of analytical service u ## Motivation -Data LifeCycle In the chemistry data lifecycle, core facilities play an important role as major producers of chemical data. For modern analytical techniques such as mass spectrometry or NMR spectroscopy, data are usually recorded digitally and the challenges lie less in digitalisation but management issues. @@ -46,24 +45,24 @@ In addition, [backup strategies](/docs/data_storage/) for all instrument worksta While most of the scientific work still lies ahead, there are already valuable metadata to be harvested and digested at the early stage of sample submission. These can include, among many others: -- Date -- Creator (person, group) -- Project -- Sample identifier -- Molecular structure(s), and derived properties: - - Molecular formula - - Molecular weight - - Elemental composition - - Physicochemical properties -- Solvent or solubility -- Purity -- Experiment information of interest, such as: - - Retation time - - Polarity - - Ionisation method - - NMR nuclei and experiments - - Chiroptical data -- Biological properties +- Date +- Creator (person, group) +- Project +- Sample identifier +- Molecular structure(s), and derived properties: + - Molecular formula + - Molecular weight + - Elemental composition + - Physicochemical properties +- Solvent or solubility +- Purity +- Experiment information of interest, such as: + - Retation time + - Polarity + - Ionisation method + - NMR nuclei and experiments + - Chiroptical data +- Biological properties The challenge of digesting those metadata according to [FAIR guiding principles](/docs/fair/) can be a challenge for core facilities and essentially come down to two possible strategies: diff --git a/docs/30_data/00_data_guide.mdx b/docs/30_data/00_data_guide.mdx index eaa8afad..ef92e5ee 100644 --- a/docs/30_data/00_data_guide.mdx +++ b/docs/30_data/00_data_guide.mdx @@ -1,50 +1,71 @@ --- title: "Guide for Handling Data" slug: "/data_guide" -id : "data_guide" - +id: "data_guide" --- -import IntroButton from '@site/src/components/IntroButton.js' +import FeatureButton from "@site/src/components/features/FeatureButton"; :::info Guidance for getting started: In this section, you can find information and resources about important topics and how to handle your data. These overarching concepts will provide key information and recommendations (such as what software might be useful to you) and refer you to other appropriate pages within the knowledge base or external resources. ::: - ### Data Management Plan - A data management plan (DMP) describes the strategies and measures for handling research data during and after a project. Its aim is to address and define the technical, organisational and legal aspects of research data management in a clearly defined document well in advance. Find out more about DMPs, how to write one and what tools are available: - + ### Data Organisation Learn how to organise your data, e.g. via appropriate file naming conventions and folder structures. In this context, data versioning, metadata & file formats are also introduced. - + ### Documentation Find out more about the tools, resources and software that can support you with data documentation. - + ### Data Storage and Archiving Storing and and archiving your data needs to be carefully considered. How many copies? Where? What access do I grant? Find out more: - + ### Data Publishing Want to make your data available to others? Not quite sure how or where to publish your data? Find out more: - + ### How to choose the right repository Not sure which repository is the right one for your data? Find out more about selected reposoitories and what data types they are appropriate for: - \ No newline at end of file + diff --git a/docs/30_data/10_dmp.mdx b/docs/30_data/10_dmp.mdx index 6d3c8095..0f17bcaa 100644 --- a/docs/30_data/10_dmp.mdx +++ b/docs/30_data/10_dmp.mdx @@ -3,6 +3,8 @@ title: "Data Management Plan" slug: "/dmp" --- +import Features from "@site/src/components/features/Features"; + # Data Management Plan (DMP) ## Introduction @@ -25,38 +27,38 @@ A good DMP offers many practical benefits for everyday research: **Scientific & organisational benefits** -- Structured data documentation: Supports consistent workflows -- Facilitates collaboration: Especially useful in interdisciplinary or multi-site projects -- Knowledge transfer: Helps new team members get up to speed faster -- Reduces data loss: By planning backups and secure storage strategies early +- Structured data documentation: Supports consistent workflows +- Facilitates collaboration: Especially useful in interdisciplinary or multi-site projects +- Knowledge transfer: Helps new team members get up to speed faster +- Reduces data loss: By planning backups and secure storage strategies early **Visibility & reproducibility** -- Increases reusability: Clear metadata and standardized formats improve data usability for others -- Enhances research integrity: Transparent documentation enables reproducibility and trust +- Increases reusability: Clear metadata and standardized formats improve data usability for others +- Enhances research integrity: Transparent documentation enables reproducibility and trust **Compliance with funders** -- A DMP or considerations of handling research data are often required by funding agencies (e.g., EU, DFG, BMFTR) -- It supports Open Science practices, compliance with the FAIR data principles and long-term data accessibility +- A DMP or considerations of handling research data are often required by funding agencies (e.g., EU, DFG, BMFTR) +- It supports Open Science practices, compliance with the FAIR data principles and long-term data accessibility ## What topics should a DMP cover? In chemistry, a DMP typically addresses the following questions: -- What kind of data will be generated? - e.g., spectra, chromatograms, reaction parameters, synthesis steps -- How will the data be documented? - Including metadata standards and tools (e.g., ELNs, repositories, guidelines) -- Where and how will the data be stored? - Local infrastructure, institutional servers, cloud services -- Who will have access to the data? - Access rights, handling of sensitive data, role-based access control -- How will the data be shared, published and/or archived? - Repositories like RADAR4Chem and Zenodo, DOI assignment, long-term availability -- What about legal, ethical, or copyright issues? - Especially relevant in collaborative or industrial research settings - Includes e.g., the selection of licenses and compliance with contractual or institutional requirements +- What kind of data will be generated? + e.g., spectra, chromatograms, reaction parameters, synthesis steps +- How will the data be documented? + Including metadata standards and tools (e.g., ELNs, repositories, guidelines) +- Where and how will the data be stored? + Local infrastructure, institutional servers, cloud services +- Who will have access to the data? + Access rights, handling of sensitive data, role-based access control +- How will the data be shared, published and/or archived? + Repositories like RADAR4Chem and Zenodo, DOI assignment, long-term availability +- What about legal, ethical, or copyright issues? + Especially relevant in collaborative or industrial research settings + Includes e.g., the selection of licenses and compliance with contractual or institutional requirements ## Which tool can I use to write a DMP? @@ -64,21 +66,37 @@ The Research Data Management Organizer (RDMO) is a free online tool that is spec **Benefits of using RDMO:** -- Supports your project throughout its entire life cycle, from planning to data publication and beyond -- Centralizes all relevant data management tasks and information in one place -- Available in both English and German -- Includes multiple DMP templates adaptable to different funder requirements -- Enables collaboration by assigning tasks to project partners and team members -- Offers import/export functions and supports a variety of download formats for further processing +- Supports your project throughout its entire life cycle, from planning to data publication and beyond +- Centralizes all relevant data management tasks and information in one place +- Available in both English and German +- Includes multiple DMP templates adaptable to different funder requirements +- Enables collaboration by assigning tasks to project partners and team members +- Offers import/export functions and supports a variety of download formats for further processing ## How do I get support in writing my DMP? NFDI4Chem offers a chemistry-specific Data Management Plan (DMP) template designed to guide researchers through the process of writing a DMP by answering structured questions. This template is based on a checklist provided by the German Research Foundation (DFG), enriched with chemistry-relevant content and supplemented with additional questions to ensure clarity and completeness. -The catalogue of questions is available as a downloadable text document or can be used directly within the Research Data Management Organizer (RDMO). + +The catalogue of questions is available as a [downloadable text document](https://doi.org/10.5281/zenodo.10948510) or can be used directly within the [Research Data Management Organizer (RDMO)](https://rdmo.nfdi4chem.de/). + + ## Sources and further information -- [Publication: Road to a Chemistry-Specific Data Management Plan](https://datascience.codata.org/articles/10.5334/dsj-2024-021) -- [Practical Guide to the International Alignment of Research Data Management - Extended Edition](https://doi.org/10.5281/zenodo.4915862) -- [Horizon Europe DMP Template](https://ec.europa.eu/research/participants/data/ref/h2020/other/gm/reporting/h2020-tpl-oa-data-mgt-plan-annotated_en.pdf) -- https://rdmkit.elixir-europe.org/data_management_plan +- [Publication: Road to a Chemistry-Specific Data Management Plan](https://datascience.codata.org/articles/10.5334/dsj-2024-021) +- [Practical Guide to the International Alignment of Research Data Management - Extended Edition](https://doi.org/10.5281/zenodo.4915862) +- [Horizon Europe DMP Template](https://ec.europa.eu/research/participants/data/ref/h2020/other/gm/reporting/h2020-tpl-oa-data-mgt-plan-annotated_en.pdf) +- https://rdmkit.elixir-europe.org/data_management_plan diff --git a/docs/30_data/40_data_documentation.mdx b/docs/30_data/40_data_documentation.mdx index be30cbff..389d745d 100644 --- a/docs/30_data/40_data_documentation.mdx +++ b/docs/30_data/40_data_documentation.mdx @@ -6,9 +6,10 @@ nfdi4chem-tags: [data_organisation, data_storage, repositories] slug: "/data_documentation" --- -import useBaseUrl from '@docusaurus/useBaseUrl'; +import FloatImage from "@site/src/components/commons/FloatImage.js"; :::note summary quote: + > Simply making your data „open“ does not make your data usable. Usability is the result of other people being able to make sense of your data: the quality of your filenames, your folder structure and your documentation greatly contribute to the level of reusability of your data. It is neither difficult nor time-consuming to maintain your data in a way that invites other researchers to investigate and explore. _Andreas von der Dunk, Technische Universität Dresden, Service Center Research Data_ @@ -16,31 +17,35 @@ _Andreas von der Dunk, Technische Universität Dresden, Service Center Research ## General basics -data for future generations + -A clean and comprehensible organisation of data and documents are an important part of good research practice and an important step to realise research data management according to the [FAIR data principles](/docs/fair). +A clean and comprehensible organisation of data and documents are an important part of good research practice and an important step to realise research data management according to the [FAIR data principles](/docs/fair). An essential task is to plan the organisation and storage of data, [metadata](/docs/metadata), and documents in advance and to document the relevant measures. Central requirements are the definition of [formal responsibilities, organisational conventions](#formal-responsibilities-and-organisational-conventions) and [technical implementations](#technical-implementations) to organise the data and meta information produced. The information collected for this purpose is recorded in the [Data Management Plan](/docs/dmp). Note that a good data organisation also estimates the costs (see [costing tool and checklist](https://ukdataservice.ac.uk/learning-hub/research-data-management/plan-to-share/costing/) for example) in the early application phase. - ### Formal responsibilities and organisational conventions To make a long story short: It's mainly about describing who will and how to work with documents. First steps could be about: + - Documenting the responsibilities of primary researchers and project staff. - Creating user roles: Define detailed rights for users / groups / roles to access data and sensitive information. - Describing processes of quality assurance including protected storage, sharing, and accessibility in the short term and on the long run. - Data processing: How, where, how fast. Describe input and output data. Decide how you will name and structure files and folders. The result should be descriptive documents that unambiguously define for files which are used in the course of the daily work routines: + - on which status (for example original file, temporary work file; Draft, intermediate version, final version), -- where (workstation PC, central file server, database), +- where (workstation PC, central file server, database), - for how long (temporarily, project duration, long-term availability), - and in which format they are saved. -small data handout - +![small data handout](/img/data/en_data_handout.png) ### Technical implementations @@ -48,18 +53,22 @@ Get an overview of the occurring data and document flows. A short description, e Data security affects all technical and organisational issues to protect the data from alteration, loss, and destruction. In this context, storage methods, backup procedures, necessary physical resources as well as automated and administrative routines must be planned and put in place. Ask local contacts or external experts about already established technologies for [Data Storage and Archiving](/docs/data_storage) as well as suitable [Repositories](/docs/repositories/). - ## Synopsis -small data handout + Good data documentation does not happen over night - take small steps first. The documentation of research data is primarily an organisational problem that is accompanied and supported by technological measures: + - Record of status quo: - - Which organisational processes have been used so far and which technologies support them? - - What are the regulatory boundaries and technical limits? - - Which personal roles are involved? - - Which devices or file formats are or have been used? - - Are there any special features? + - Which organisational processes have been used so far and which technologies support them? + - What are the regulatory boundaries and technical limits? + - Which personal roles are involved? + - Which devices or file formats are or have been used? + - Are there any special features? - Awareness: Who produces (meta)data, and who continues to use data and how? - Define internal rules and processes: What are the targets of RDM, and how can it be achieved? - Apply and evaluate rules, iteratively: Learn, set, follow, repeat. Keep it simple and smart (KISS). @@ -69,8 +78,8 @@ Good data documentation does not happen over night - take small steps first. The - Make rules and decisions accessible to everyone at an early stage, for example in the form of a short handout. - Check the concept regularly and update it if necessary. - ## Sources and further information + - https://rdmkit.elixir-europe.org/metadata_management.html - https://www.data.cam.ac.uk/data-management-guide/organising-your-data - https://rfii.de/en/topics/ diff --git a/docs/40_smartlab/00_smartlab.mdx b/docs/40_smartlab/00_smartlab.mdx index 109b8c95..6178eefc 100644 --- a/docs/40_smartlab/00_smartlab.mdx +++ b/docs/40_smartlab/00_smartlab.mdx @@ -4,7 +4,7 @@ slug: "/smartlab" id: "smartlab" --- -import IntroButton from "@site/src/components/IntroButton.js"; +import FeatureButton from "@site/src/components/features/FeatureButton"; import useBaseUrl from "@docusaurus/useBaseUrl"; # Smart Laboratory (Smart Lab) @@ -19,7 +19,7 @@ In this section, key components of the smart lab will be introduced to you. ## Get started: - - -

Simple system

-
    -
  • Enter text
  • -
  • Add notes
  • -
  • Add files as attachments
  • -
  • Sharing
  • -
  • Searching
  • -
- e.g., Evernote GoogleDrive, Dropbox, MS Sharepoint -
- -

Electronic Lab Notebook (ELN)

-
    -
  • Structured metadata in human and machine-readable formats
  • -
  • Discipline-specific functions / editors
  • -
  • Rights management
  • -
  • Audit trail
  • -
  • API
  • -
- e.g., Labfolder, RSpace, eLabFTW, Labguru -
- -

Laboratory Information Management System

-
    -
  • Sample management
  • -
  • Instrument integration
  • -
  • Electronic signatures
  • -
  • Reporting or statistics modules
  • -
- e.g., Benchling, Starlims, Limesophy -
+ +

Simple system

+
    +
  • Enter text
  • +
  • Add notes
  • +
  • Add files as attachments
  • +
  • Sharing
  • +
  • Searching
  • +
+ e.g., Evernote GoogleDrive, Dropbox, MS Sharepoint +
+ +

Electronic Lab Notebook (ELN)

+
    +
  • Structured metadata in human and machine-readable formats
  • +
  • Discipline-specific functions / editors
  • +
  • Rights management
  • +
  • Audit trail
  • +
  • API
  • +
+ e.g., Labfolder, RSpace, eLabFTW, Labguru +
+ +

Laboratory Information Management System

+
    +
  • Sample management
  • +
  • Instrument integration
  • +
  • Electronic signatures
  • +
  • Reporting or statistics modules
  • +
+ e.g., Benchling, Starlims, Limesophy +
## Advantages of an ELN @@ -57,42 +60,44 @@ One of the most important things that distinguishes an ELN from a blank piece of ELNs help to link experimental descriptions directly to the collected data so that all information can be found in one place. Furthermore, data loss is avoided by secure data storage and backups. Storing all the data in one central place helps also with knowledge management because the data is easily findable and accessible, even for new members in a research project. The biggest advantage of an ELN is that [metadata](/docs/metadata) is stored in a structured and [standardised](/docs/format_standards) way. This also helps with publishing research results and transferring research data to a repository. - -

Avoid Data Loss

-
    -
  • Linking experimental descriptions to collected data (analogue and digital)
  • -
  • Secure data storage, backups
  • -
-
- -

Knowledge Management

-
    -
  • Data is findable
  • -
  • Data is accessible
  • -
  • Data is available, even after change of personnel
  • -
-
-
- Data LifeCycle -
- -

Standardised Documentation

-
    -
  • Structured and standardised collection of metadata
  • -
  • Generation of interoperable (meta)data
  • -
-
- -

Publication

-
    -
  • Data provision for publication of research results
  • -
  • Simple transfer of data to repositories
  • -
-
+ +

Avoid Data Loss

+
    +
  • + Linking experimental descriptions to collected data (analogue and + digital) +
  • +
  • Secure data storage, backups
  • +
+
+ +

Knowledge Management

+
    +
  • Data is findable
  • +
  • Data is accessible
  • +
  • Data is available, even after change of personnel
  • +
+
+ + +

Standardised Documentation

+
    +
  • Structured and standardised collection of metadata
  • +
  • Generation of interoperable (meta)data
  • +
+
+ +

Publication

+
    +
  • Data provision for publication of research results
  • +
  • Simple transfer of data to repositories
  • +
+
FAIR Image Attribution: SangyaPundir, [CC BY-SA 4.0](https://creativecommons.org/licenses/by-sa/4.0). diff --git a/docs/50_data_publication/00_data_publishing.mdx b/docs/50_data_publication/00_data_publishing.mdx index 36852eed..c614edee 100644 --- a/docs/50_data_publication/00_data_publishing.mdx +++ b/docs/50_data_publication/00_data_publishing.mdx @@ -4,8 +4,6 @@ slug: "/data_publishing" id: "data_publishing" --- -import useBaseUrl from "@docusaurus/useBaseUrl"; - # Data Publishing :::info Applies to: @@ -24,13 +22,7 @@ To publish data is essential to ensure that findings are transparent and reprodu There are direct benefits for researchers who publish their data. Data publications increase your career recognition, enable new collaborations, and provide a citation advantage compared to articles without an associated and linked dataset in a research data repository. -Data Publication Brian Hole CC BY 4.0 - +![Data Publication Brian Hole CC BY 4.0](/img/data_pub/data_publication_brian_hole_CC_BY_40.png) (Source: Brian Hole, [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/), [Slideshare](https://www.slideshare.net/brianhole/the-journal-of-open-archaeology-data-and-prime-incentivising-open-data-archiving)) Additionally, the research community benefits here as, for example, new research is made possible and efficiency in research increases. Also the public sector will profit by enhanced public trust in science, as data publishing allows for the validation of research results. Nonetheless, the publication of data is also of economic benefit if the results can be reused by the private sector. @@ -39,8 +31,8 @@ Additionally, the research community benefits here as, for example, new research There are two main ways to publish research data: -- publish data in a [research data repository](/docs/repositories/) -- publish a separate [data article](/docs/data_articles/) with the corresponding dataset published in a [research data repository](/docs/repositories/) +- publish data in a [research data repository](/docs/repositories/) +- publish a separate [data article](/docs/data_articles/) with the corresponding dataset published in a [research data repository](/docs/repositories/) :::info Info: Field-specific repositories should be the first choice as these repositories enhance the FAIRness of data on behalf of the submitters. To retain the same level of FAIRness, data publishing in generic repositories requires manual FAIRification. @@ -58,10 +50,10 @@ Still confused about how to publish chemistry data? We do provide a consulting a ## Sources and further information -- [The citation advantage of linking publications to research data](https://doi.org/10.1371/journal.pone.0230416) -- [NSF Public Access Plan 2.0](https://nsf-gov-resources.nsf.gov/2023-06/NSF23104.pdf) -- [DFG Code of Conduct, Guideline 13: Providing public access to research results](https://wissenschaftliche-integritaet.de/en/code-of-conduct/providing-public-access-to-research-results/) -- [How does Open Science practice differ between research disciplines?](https://theplosblog.plos.org/2023/07/open-science-by-discipline/) +- [The citation advantage of linking publications to research data](https://doi.org/10.1371/journal.pone.0230416) +- [NSF Public Access Plan 2.0](https://nsf-gov-resources.nsf.gov/2023-06/NSF23104.pdf) +- [DFG Code of Conduct, Guideline 13: Providing public access to research results](https://wissenschaftliche-integritaet.de/en/code-of-conduct/providing-public-access-to-research-results/) +- [How does Open Science practice differ between research disciplines?](https://theplosblog.plos.org/2023/07/open-science-by-discipline/) --- diff --git a/docs/50_data_publication/25_best_practice.mdx b/docs/50_data_publication/25_best_practice.mdx index 76c6317e..4dbab2c4 100644 --- a/docs/50_data_publication/25_best_practice.mdx +++ b/docs/50_data_publication/25_best_practice.mdx @@ -27,8 +27,8 @@ Are you asking yourself right now, "That's it?" Yes, that's it! As mentioned abo For a better understanding of data publishing in field-specific repositories and how this data could be linked to related journal publications, the following examples including their data can be accessed via the following Lead by Example pages: -- in Chemotion Repository: [Modular Synthesis of New Pyrroloquinoline Quinone Derivatives](/docs/datasets/?doi=10.1055/s-0041-1738426). -- in Chemotion Repository and CSD/CCDC: [Modular Synthesis of trans‐A2B2‐Porphyrins with Terminal Esters: Systematically Extending the Scope of Linear Linkers for Porphyrin‐Based MOFs](/docs/datasets/?doi=10.1002/chem.202003885). +- in Chemotion Repository: [Modular Synthesis of New Pyrroloquinoline Quinone Derivatives](/docs/datasets/?doi=10.1055/s-0041-1738426). +- in Chemotion Repository and CSD/CCDC: [Modular Synthesis of trans‐A2B2‐Porphyrins with Terminal Esters: Systematically Extending the Scope of Linear Linkers for Porphyrin‐Based MOFs](/docs/datasets/?doi=10.1002/chem.202003885). ## Best practices for generic repositories @@ -36,22 +36,16 @@ While field-specific repositories provide significant support for the [FAIRifica To start, all data to be published should be collected and ordered in a logical folder structure, e.g. a folder for NMR and another folder for MS data (figure 1). Nested folder structures should be avoided and aspects of [data organisation](/docs/data_organisation), such as file naming, should be taken into account. Researchers should aim for a data package which is as self-explanatory as the supplemental PDFs, they have previously published along scientific articles. - - +![Example folder structure and content of the Lead by Example dataset of Linderazuelene](/img/data_pub/best_practice_generic_folders_content.png) **Figure 1:** Example folder structure and content of the [Lead by Example](/docs/lbe_intro) dataset of [Linderazuelene](/docs/datasets/?doi=10.1002/ciuz.201900868). For further aspects to consider, we provide a non-exhaustive list of generic best practices on what a chemistry dataset should contain and how the chemical data should be represented and described. Please note, that [domain-specific](/docs/domain_guide) aspects also need to be considered. -- **Data should be published in open formats along the original raw data in proprietary formats.**
[Open formats](/docs/format_standards) for analytical data should be the main choice. However, many analytical instruments provide data in proprietary formats. Not all data in these formats is necessarily also included in the selected open format it was converted to, depending on the specification of the format applied. Hence, the original raw data (in proprietary formats) should also be published, although this data may have limited interoperability. Publishing original raw data is a measure of scientific integrity and allows for unbiased reprocessing and reuse of data. If no open format exists, export as text file, i.e. without any format specification, should be considered. -- **Data should be linked to chemical structures and reactions.**
As analytical data are usually named following lab journal entries, the dataset must include a description of which data correspond to which sample, molecule, or experiment. This should be included in the format used for analytical data. Another solution on that is to provide a [supplementary table](/docs/machine-readable_chemical_structures/#provide-machine-readable-data-as-supplementary-table) (figure 1) within the data package, which should include InChI structure identifiers and SMILES structure codes and additional information such as RInChI reaction identifiers. Second-tier, chemical structures might also be added and represented as [CT files](/docs/ct_files) such as mol or SDfiles (figure 1). [RXNfiles](/docs/ct_files) may be used to describe chemical reactions in a machine readable way. -- **Datasets should include scripts and workflows and information on software used.**
Workflows, i.e. scripts used for data processing, and input parameters for semi-automatic scripts, should be included. The metadata of the whole dataset should describe the language and version of scripts used as well as other software applied. Best practice is not only to include the code but to add notebooks such as R Notebooks or Jupyther notebooks. -- **Data should be described with metadata and minimum information standards should be followed.**
[Domain-independent](/docs/metadata/#domain-independent-metadata) metadata, via the repository's metadata editor, should be provided. Additionally, [domain-specific](/docs/metadata/#domain-specific-metadata) metadata should be published via the metadata editor, if supported by the repository of choice, or within the analytical data or an additional README file. [Minimum information requirements](/docs/metadata/#minimum-information-standards-mi) as set by the chemistry community and followed in manuscripts and previously also in supplementary PDFs should be included. -- **The provenance information of data should be included.**
Part of that [provenance information](/docs/provenance) is part of the dataset's metadata and should be added via the metadata editor of the repository. All information which previously would have typically been included in the supplemental PDF section on general information and protocols, e.g. information on methods and instruments used, are provenance information and should be added to a README file, as long as no domain-specific metadata schema is available. This README could be a text file, or written in Markdown, while also a human-readable rendered representation as HTML could be provided. +- **Data should be published in open formats along the original raw data in proprietary formats.**
[Open formats](/docs/format_standards) for analytical data should be the main choice. However, many analytical instruments provide data in proprietary formats. Not all data in these formats is necessarily also included in the selected open format it was converted to, depending on the specification of the format applied. Hence, the original raw data (in proprietary formats) should also be published, although this data may have limited interoperability. Publishing original raw data is a measure of scientific integrity and allows for unbiased reprocessing and reuse of data. If no open format exists, export as text file, i.e. without any format specification, should be considered. +- **Data should be linked to chemical structures and reactions.**
As analytical data are usually named following lab journal entries, the dataset must include a description of which data correspond to which sample, molecule, or experiment. This should be included in the format used for analytical data. Another solution on that is to provide a [supplementary table](/docs/machine-readable_chemical_structures/#provide-machine-readable-data-as-supplementary-table) (figure 1) within the data package, which should include InChI structure identifiers and SMILES structure codes and additional information such as RInChI reaction identifiers. Second-tier, chemical structures might also be added and represented as [CT files](/docs/ct_files) such as mol or SDfiles (figure 1). [RXNfiles](/docs/ct_files) may be used to describe chemical reactions in a machine readable way. +- **Datasets should include scripts and workflows and information on software used.**
Workflows, i.e. scripts used for data processing, and input parameters for semi-automatic scripts, should be included. The metadata of the whole dataset should describe the language and version of scripts used as well as other software applied. Best practice is not only to include the code but to add notebooks such as R Notebooks or Jupyther notebooks. +- **Data should be described with metadata and minimum information standards should be followed.**
[Domain-independent](/docs/metadata/#domain-independent-metadata) metadata, via the repository's metadata editor, should be provided. Additionally, [domain-specific](/docs/metadata/#domain-specific-metadata) metadata should be published via the metadata editor, if supported by the repository of choice, or within the analytical data or an additional README file. [Minimum information requirements](/docs/metadata/#minimum-information-standards-mi) as set by the chemistry community and followed in manuscripts and previously also in supplementary PDFs should be included. +- **The provenance information of data should be included.**
Part of that [provenance information](/docs/provenance) is part of the dataset's metadata and should be added via the metadata editor of the repository. All information which previously would have typically been included in the supplemental PDF section on general information and protocols, e.g. information on methods and instruments used, are provenance information and should be added to a README file, as long as no domain-specific metadata schema is available. This README could be a text file, or written in Markdown, while also a human-readable rendered representation as HTML could be provided. :::danger Notice: Does that sound like a lot of manual work? Avoid extra work by using a [smart lab](/docs/smartlab) digital environments for collecting, processing, analysing, and publishing research data, such as [Chemotion ELN](/docs/chemotion) in combination with [Chemotion Repository](/docs/chemotion_repository)! Plus, you may omit the preparation of supplementary PDFs and use the saved work time to prepare your dataset for publication! @@ -61,10 +55,10 @@ Does that sound like a lot of manual work? Avoid extra work by using a [smart la For a better understanding of data publishing in generic repositories and how this data could be linked to related journal publications, the following examples, including their data, can be accessed via the following Lead by Example pages: -- in RADAR4Chem: [Linderazulen aus einer invasiven Pflanze - Delphi und sein violettes Wunder](/docs/datasets/?doi=10.1002/ciuz.201900868). -- in Zenodo: [A dataset of 255,000 randomly selected and manually classified extracted ion chromatograms for evaluation of peak detection methods](/docs/datasets/?doi=10.3390/metabo10040162). -- in RADAR: [Synthesis and biological evaluation of highly potent fungicidal deoxy-hygrophorones](/docs/datasets/?doi=10.1002/ejoc.202100729). -- in DaRus: [Predictive design of ordered mesoporous silica with well-defined, ultra-large mesopores](/docs/datasets/?doi=10.1039/D2ME00107A). +- in RADAR4Chem: [Linderazulen aus einer invasiven Pflanze - Delphi und sein violettes Wunder](/docs/datasets/?doi=10.1002/ciuz.201900868). +- in Zenodo: [A dataset of 255,000 randomly selected and manually classified extracted ion chromatograms for evaluation of peak detection methods](/docs/datasets/?doi=10.3390/metabo10040162). +- in RADAR: [Synthesis and biological evaluation of highly potent fungicidal deoxy-hygrophorones](/docs/datasets/?doi=10.1002/ejoc.202100729). +- in DaRus: [Predictive design of ordered mesoporous silica with well-defined, ultra-large mesopores](/docs/datasets/?doi=10.1039/D2ME00107A). --- diff --git a/docs/50_data_publication/51_lbe/00_lbe_intro.mdx b/docs/50_data_publication/51_lbe/00_lbe_intro.mdx index e5ca1936..2a1dfebf 100644 --- a/docs/50_data_publication/51_lbe/00_lbe_intro.mdx +++ b/docs/50_data_publication/51_lbe/00_lbe_intro.mdx @@ -4,7 +4,7 @@ slug: "/lbe_intro" id: "lbe_intro" --- -import IntroButton from '@site/src/components/IntroButton.js' +import FeatureButton from "@site/src/components/features/FeatureButton"; NFDI4Chem has a clear vision of how chemistry research data will be collected, processed, archived, shared and published. The development of standards for metadata, minimum information, analytical data formats as well as publication standards includes sample datasets in a substantial standard-compliant manner. @@ -16,7 +16,12 @@ Take a look at the list for inspiration as to what is already possible today! Do you want to have your published dataset highlighted here or do you need assistance in the preparation of your dataset for publication? Pledge your dataset to NFDI4Chem! More information can be found [here](https://www.nfdi4chem.de/index.php/2022/12/15/data-pledge/). - + + +--- ----- Main author: [ORCID:0000-0003-4480-8661](https://orcid.org/0000-0003-4480-8661) diff --git a/docs/50_data_publication/70_publishing_standards/28_publishing_standards_intro.mdx b/docs/50_data_publication/70_publishing_standards/28_publishing_standards_intro.mdx index c59c69bf..a39f3323 100644 --- a/docs/50_data_publication/70_publishing_standards/28_publishing_standards_intro.mdx +++ b/docs/50_data_publication/70_publishing_standards/28_publishing_standards_intro.mdx @@ -4,21 +4,23 @@ slug: "/publishing_standards" id: "publishing_standards_intro" --- -import N4CFeatures from '/src/components/N4CFeatures.js'; +import Features from "@site/src/components/features/Features"; +import stakeholders from "@site/src/data/stakeholders"; :::info Info: Authors, academic publishers and research data infrastructure providers are the target audiences for these standards. ::: -On these pages we collect a non-exhaustive list of data publishing standards, formulated as principles, that have been developed within the NFDI4Chem Publication Standards project. These standards are intended to implement the [FAIR Data Principles](/docs/fair/) with respect to data publishing workflows. The main objective of these standards is to improve the quality of metadata and streamline publishing workflows, including the manuscript peer-review process with corresponding datasets published in research data repositories. +On these pages we collect a non-exhaustive list of data publishing standards, formulated as principles, that have been developed within the NFDI4Chem Publication Standards project. These standards are intended to implement the [FAIR Data Principles](/docs/fair/) with respect to data publishing workflows. The main objective of these standards is to improve the quality of metadata and streamline publishing workflows, including the manuscript peer-review process with corresponding datasets published in research data repositories. -Click on a button below to get started with standards for authors, academic publishers and infrastructure providers. These standards will be continuously updated. +Click on a button below to get started with standards for authors, academic publishers and infrastructure providers. These standards will be continuously updated. - + :::danger Notice: For more generic information for authors on publishing in field-specific and generic, multidisciplinary repositories such as publishing data in open formats or providing machine-readable chemical structures alongside the analytical data, please have a look to our page on [Best-Practices](/docs/best_practice/). ::: ----- +--- + Main authors: [ORCID:0000-0003-4480-8661](https://orcid.org/0000-0003-4480-8661), [ORCID: 0000-0002-6243-2840](https://orcid.org/0000-0002-6243-2840) diff --git a/docs/60_topics/61_identifiers/10_pid.mdx b/docs/60_topics/61_identifiers/10_pid.mdx index f103ac1d..ff3ef73e 100644 --- a/docs/60_topics/61_identifiers/10_pid.mdx +++ b/docs/60_topics/61_identifiers/10_pid.mdx @@ -4,6 +4,8 @@ slug: "/pid" --- import useBaseUrl from "@docusaurus/useBaseUrl"; +import FloatImage from "@site/src/components/commons/FloatImage.js"; +import ButtonContainer from "@site/src/components/features/ButtonContainer.js"; # Persistent Identifiers (PIDs) @@ -15,13 +17,11 @@ The main benefits of PIDs for chemistry researchers are increased findability, v ## DOIs -DOI logo Digital Object Identifiers are PIDs for objects such as publications and datasets, but also physical objects. DOIs are resolved based on the [Handle System](https://www.handle.net/)to lead to the corresponding landing page and are assigned by members of the [International DOI Foundation](https://datascience.codata.org/articles/abstract/353/). Most well-recognised [DOI registration agencies](https://www.doi.org/the-community/existing-registration-agencies/) include [CrossRef](https://www.crossref.org/) for publications and [DataCite](https://datacite.org/) focusing on [datasets](https://doi.org/10.1109/COINFO.2009.66). @@ -30,24 +30,21 @@ A DOI consists of a character string divided into two parts by a slash. The pref DOIs are most frequently displayed as an URL such as `https://doi.org/10.1000/182` and include a resolver as HTTP proxy server to redirect to the linked object. DOIs are standardised by the [International Organisation for Standardisation](https://www.iso.org/) (ISO) in [ISO 26324](https://www.iso.org/standard/43506.html). -
- + - DataCite logo -
-

+ :::danger Notice: Most importantly, domain-independent [metadata](/docs/metadata) also including [provenance information](/docs/provenance) is attached to the DOI. This metadata follows the metadata schemes provided by registration agencies such as the [CrossRef Metadata Schema](https://www.crossref.org/documentation/schema-library/) and the [DataCite Metadata Schema](https://schema.datacite.org/). @@ -57,13 +54,11 @@ Registrants are [liable](https://support.datacite.org/docs/doi-registration-poli ## ORCID iDs -ORCiD logo [ORCID iDs](https://orchid.org/) are open and non-proprietary PIDs for authors also described as unique author identifiers and can be retrieved and used by any author free of charge. They are provided by the non-profit organization ORCID Inc., formerly called Open Research and Contributors ID organisation, and sustained by fees of member organisations, providing extended application program interfaces (API) for their members to integrate ORCID services. @@ -76,13 +71,11 @@ In addition to ORCID iDs as non-proprietary PIDs for authors, there are also pro ## Resarch Organisation Registry -ROR logo CC BY 4.0 The Research Organisation Registry ([ROR](https://ror.org/)) provides persistent identifiers for research organisations, while names might not be unique, may change and organisations might be merged, split, shut down or re-emerge. ROR enables to connect research organisations to research outputs and their researchers by identifying their affiliations. @@ -93,13 +86,12 @@ ROR does support parent-child hierarchies as well as lateral relationships betwe ## ePICs -ePIC Header logo The Persistent Identifier for eResearch ([ePICs](https://www.pidconsortium.net/)) are based on the [Handle.Net Registry (HNR)](https://www.handle.net/) and are intended to be used for unpublished digital research objects. To this end, ePICs can be assigned at early stages of research to locate research data and may be used by various research data management or archiving systems. Upon publication of a dataset, the full research data can be linked via the ePIC, for example, in cases that include proprietary or sensitive information. @@ -108,13 +100,11 @@ This type of PID will commonly lead to a landing page, the content of which is m ## ARK -ARK logo The Archival Research Key ([ARK](https://arks.org/about/ark-overview/)) are open identifiers hich are assigned to physical and digital information objects, mostly in the cultural studies. diff --git a/docs/60_topics/63_data_description_annotation/20_ontology.mdx b/docs/60_topics/63_data_description_annotation/20_ontology.mdx index 4a0fc719..49f34ccd 100644 --- a/docs/60_topics/63_data_description_annotation/20_ontology.mdx +++ b/docs/60_topics/63_data_description_annotation/20_ontology.mdx @@ -33,8 +33,8 @@ The term ontology, as used in our context, refers to a formally specified concep > -![Ontology-based RDM](/img/topics/Graphical_Abstract_Ontologies4Chem_2021.svg) -Image Attribution: Philip Strömert, Oliver Koepler, Johannes Hunold, Steffen Neumann, [CC BY-SA 4.0](https://creativecommons.org/licenses/by-sa/4.0) +![Ontology-based RDM](/img/topics/Graphical_Abstract_Ontologies4Chem_2021.jpg) +Image Attribution: Philip Strömert, Oliver Koepler, Johannes Hunold, Steffen Neumann, [CC BY-NC-ND 4.0](https://creativecommons.org/licenses/by-nc-nd/4.0/) Research data is more than the aggregation of numbers or images in a scientific journal article, experimental section, or supplementary information. To fully reproduce the deduction of the results, we need access to the raw data and how it was generated, processed and analyzed. While humans can grasp all the semantics and knowledge expressed in articles and their experimental sections, computers can not do so without fine grained metadata annotations. As can be seen exemplarily in the graphical abstract above, ontologies, taxonomies, terminologies or controlled vocabularies can be used to semantically describe research data, producing this FAIR and machine-readable data. Quite a few ontologies already exist for the semantic description of general scientific concepts and relations, as well as for chemistry specific ones. Based on an [analysis done in Task Area 6.1](https://doi.org/10.1515/pac-2021-2007) of the NFDI4Chem project, the present article provides a commented selection of those ontologies that seem most suitable for a FAIR RDM in chemistry, as well as a very brief [glossary](/docs/ontology#glossary) of ontological technical terms. diff --git a/readme/advanced.md b/readme/advanced.md index 5371c46b..d3f51469 100644 --- a/readme/advanced.md +++ b/readme/advanced.md @@ -17,24 +17,41 @@ In order to link the file in your document, use the following Markdown: The example assumes that your Markdown file is located on the third filesystem level, e.g. `/docs/10_domains/`. If not, please adjust the number of `../` pointers accordingly. -## Format images using `img` +## Format images -In some cases, the image markdown might be too limited and it might be better to use the `img` html tag. To do so, add the following line at the beginning (but after the [front matter](https://docusaurus.io/docs/create-doc#doc-front-matter)): +In some cases, the image markdown might be too limited. For that case, we provide a custom `` component. -``` +**Important:** In MDX files, import the component after the frontmatter section: + +```mdx --- -title: "Title of my page" +title: My Page Title --- -import useBaseUrl from '@docusaurus/useBaseUrl'; -``` +import FloatImage from "@site/src/components/commons/FloatImage"; -Where you wish to reference the image, use the `img` html tag in this way: +# Page content starts here + ``` -My image + +You can also make the image clickable by adding a `link` prop: + +```mdx + ``` +For more details, refer to the [Custom Components documentation](./custom.md). + ## Dynamic tables ### All or individual entries diff --git a/readme/custom.md b/readme/custom.md new file mode 100644 index 00000000..d1776ac6 --- /dev/null +++ b/readme/custom.md @@ -0,0 +1,128 @@ +# Custom Components + +## FloatImage + +A responsive image component with optional linking and custom styling capabilities. + +**Import:** + +```jsx +import FloatImage from "@site/src/components/commons/FloatImage"; +``` + +**Usage:** + +```jsx + +``` + +**Props:** + +* `url` (string, required) - Path to the image file (relative to static folder) +* `alt` (string, required) - Alternative text for the image +* `link` (string, optional) - URL to wrap the image in a clickable link +* `...props` (any CSS properties) - Any additional props are applied as inline styles (e.g., `width`, `float`, `margin`) + +**Default Styling:** + +The component has the following default styling: + +* `width: min(120px, 50%)` - Responsive width with 120px maximum +* `float: right` - Floats to the right by default +* `margin: 0px 20px 0px 20px` - 20px left and right margin + +Any of these can be overriden by passing props: + +```jsx + +``` + +*** + +## LbeChip + +A clickable chip component that links to the Lead by Example datasets page filtered by a specific subdiscipline. + +**Import:** + +```jsx +import LbeChip from "@site/src/components/commons/LbeChip"; +``` + +**Usage:** + +```jsx + +``` + +**Props:** + +* `title` (string, required) - The subdiscipline name used for filtering datasets + +*** + +## BulletBox + +A styled box component designed to display content in a responsive card-like button format. + +**Import:** + +```jsx +import { BulletBox } from "@site/src/components/commons/BulletBox"; +``` + +**Usage:** + +```jsx + +

Feature Title

+

Feature description goes here.

+
+``` + +**Props:** + +* `children` (ReactNode, required) - Content to display inside the box +* `secondary` (boolean, optional) - If true, applies secondary button styling; otherwise uses primary styling + +*** + +## BulletContainer + +A wrapper component that arranges multiple BulletBox components in a responsive grid layout. + +**Import:** + +```jsx +import { BulletContainer } from "@site/src/components/commons/BulletBox"; +``` + +**Usage:** + +```jsx + + +

Feature 1

+

Description 1

+
+ +

Feature 2

+

Description 2

+
+
+``` + +**Props:** + +* `children` (ReactNode, required) - Typically contains multiple BulletBox components diff --git a/scripts/articleCount.sh b/scripts/articleCount.sh new file mode 100644 index 00000000..22a38148 --- /dev/null +++ b/scripts/articleCount.sh @@ -0,0 +1,39 @@ +#!/bin/bash + +# This script counts the number of articles (MD or MDX files) in the 'docs' directory +# and assembles a table of contents with their titles, slugs, and number of words. + +DOCS_DIR="../docs" +OUTPUT_FILE="article_count.md" + +echo "# Article Count" > $OUTPUT_FILE +echo "" >> $OUTPUT_FILE +echo "| Title | Slug | MD/MDX file path |Word Count |" >> $OUTPUT_FILE +echo "|-------|------|------------|-----------|" >> $OUTPUT_FILE +for file in $(find $DOCS_DIR -name "*.mdx" -o -name "*.md"); do + # Extract title from the first line (assuming it's in the format: # Title) + # If no # header is given, try to find the title from frontmatter + title=$(grep -m 1 '^# ' "$file" | sed 's/^# //') + if [ -z "$title" ]; then + title=$(grep -m 1 'title:' "$file" | sed 's/title: "//;s/"//') + fi + + # Extract slug from frontmatter + slug=$(grep -m 1 'slug:' "$file" | sed 's/slug: "//;s/"//') + + # Relative file path + relative_path=${file#"$DOCS_DIR/"} + + # Count words in the file + word_count=$(wc -w < "$file") + + # Remove linebreaks + + title=$(echo $title | tr -d '\n' | tr -s ' ') + slug=$(echo $slug | tr -d '\n' | tr -s ' ') + relative_path=$(echo $relative_path | tr -d '\n' | tr -s ' ') + word_count=$(echo $word_count | tr -d '\n' | tr -s ' ') + + # Append to output file + echo "| $title | $slug | $relative_path | $word_count |" >> $OUTPUT_FILE +done diff --git a/src/components/IntroButton.js b/src/components/IntroButton.js deleted file mode 100644 index 5c05bb8c..00000000 --- a/src/components/IntroButton.js +++ /dev/null @@ -1,26 +0,0 @@ -import useBaseUrl from "@docusaurus/useBaseUrl"; - -import styles from "@site/src/css/N4CFeatures.module.css"; -import clsx from "clsx"; - -export default function IntroButton(props) { - return ( - - ); -} diff --git a/src/components/N4CFeatures.js b/src/components/N4CFeatures.js deleted file mode 100644 index 43e40ebb..00000000 --- a/src/components/N4CFeatures.js +++ /dev/null @@ -1,156 +0,0 @@ -import Link from "@docusaurus/Link"; -import useBaseUrl from "@docusaurus/useBaseUrl"; -import Translate from "@docusaurus/Translate"; - -import styles from "@site/src/css/N4CFeatures.module.css"; -import clsx from "clsx"; - -const features = { - entry: [ - { - title: Domains, - svg: "/img/nfdi4chem_Domains_white.svg", - link: "/docs/domain_guide", - }, - { - title: Roles, - svg: "/img/nfdi4chem_Roles_white.svg", - link: "/docs/role_guide", - }, - { - title: Handling Data, - svg: "/img/nfdi4chem_Handling_Data_white.svg", - link: "/docs/data_guide", - }, - { - title: Electronic Lab Notebooks, - svg: "/img/nfdi4chem_SmartLab_white.svg", - link: "/docs/smartlab", - }, - { - title: Data Publishing, - svg: "/img/nfdi4chem_Data_Publication_white.svg", - link: "/docs/data_publishing", - }, - ], - domains: [ - { - title: Analytical Chemistry, - svg: "/img/nfdi4chem_Analytical_Chemistry.svg", - link: "/docs/analytical_chemistry", - }, - { - title: Electrochemistry, - svg: "/img/nfdi4chem_Electrochemistry.svg", - link: "/docs/electrochemistry", - }, - { - title: Pharmaceutical Chemistry, - svg: "/img/nfdi4chem_Medicinal-Pharmaceutical_Chemistry.svg", - link: "/docs/pharmaceutical_chemistry", - }, - { - title: Physical Chemistry, - svg: "/img/nfdi4chem_Physial_Chemistry.svg", - link: "/docs/physical_chemistry", - }, - { - title: Synthetic Chemistry, - svg: "/img/nfdi4chem_Synthetic_Chemistry.svg", - link: "/docs/synthetic_chemistry", - }, - ], - roles: [ - { - title: Research Group Leader, - svg: "/img/nfdi4chem_Research_Group_Leader.svg", - link: "/docs/research_group_leader", - }, - { - title: Research Group Member, - svg: "/img/nfdi4chem_Research_Group_Member.svg", - link: "/docs/research_group_member", - }, - { - title: Student, - svg: "/img/nfdi4chem_Student.svg", - link: "/docs/student", - }, - { - title: Data Steward, - svg: "/img/nfdi4chem_Data_Steward.svg", - link: "/docs/data_steward", - }, - { - title: Core Facility Manager, - svg: "/img/nfdi4chem_Core_Facility_Manager.svg", - link: "/docs/core_facility_manager", - }, - ], - stakeholders_data_publishing: [ - { - title: Authors, - svg: "/img/nfdi4chem_Research_Group_Member.svg", - link: "/docs/publishing_standards_authors", - }, - { - title: Academic Publishers, - svg: "/img/nfdi4chem_Student.svg", - link: "/docs/publishing_standards_publishers", - }, - { - title: Infrastructure Providers, - svg: "/img/nfdi4chem_Core_Facility_Manager.svg", - link: "/docs/publishing_standards_infrastructure", - }, - ], -}; - -function Feature({ title, svg, link, style }) { - return ( -
-
- {link ? ( - - {title} -
- {title} - - ) : ( -

{title}

- )} -
-
- ); -} - -export default function N4CFeatures({ feature }) { - var style = ""; - const featureList = features[feature]; - - if (feature == "entry") { - style = "button button--primary " + styles.featureButton; - } else { - style = "button button--secondary " + styles.featureButtonSecondary; - } - - return ( -
-
-
- {featureList.map((props, idx) => ( - - ))} -
-
-
- ); -} diff --git a/src/components/BulletBox.js b/src/components/commons/BulletBox.js similarity index 77% rename from src/components/BulletBox.js rename to src/components/commons/BulletBox.js index e4531556..196a9128 100644 --- a/src/components/BulletBox.js +++ b/src/components/commons/BulletBox.js @@ -1,7 +1,8 @@ import clsx from "clsx"; +import styles from "@site/src/css/BulletBox.module.css"; function BulletContainer({ children }) { - return
{children}
; + return
{children}
; } function BulletBox({ children, secondary }) { diff --git a/src/components/commons/LbeChip.js b/src/components/commons/LbeChip.js new file mode 100644 index 00000000..910dc9fe --- /dev/null +++ b/src/components/commons/LbeChip.js @@ -0,0 +1,17 @@ +import Link from "@docusaurus/Link"; +import useBaseUrl from "@docusaurus/useBaseUrl"; + +import styles from "@site/src/css/lbe.module.css"; +import clsx from "clsx"; + +function LbeChip({ title }) { + return ( + + + + ); +} + +export default LbeChip; diff --git a/src/components/features/ButtonContainer.js b/src/components/features/ButtonContainer.js new file mode 100644 index 00000000..3dffbcf8 --- /dev/null +++ b/src/components/features/ButtonContainer.js @@ -0,0 +1,7 @@ +import styles from "@site/src/css/Features.module.css"; + +function ButtonContainer({ children }) { + return
{children}
; +} + +export default ButtonContainer; diff --git a/src/components/features/FeatureButton.js b/src/components/features/FeatureButton.js new file mode 100644 index 00000000..736a707c --- /dev/null +++ b/src/components/features/FeatureButton.js @@ -0,0 +1,30 @@ +import useBaseUrl from "@docusaurus/useBaseUrl"; +import Link from "@docusaurus/Link"; + +import styles from "@site/src/css/Features.module.css"; + +import clsx from "clsx"; + +function FeatureButton({ url, imgUrl, text, ...props }) { + let classes = clsx( + "button", + { "button--primary": props.index }, + { "button--secondary": !props.index }, + props.classes, + styles.featureButton, + { [styles.featureButtonIndex]: props.index }, + ); + + const width = props?.width ?? "120px"; + + return ( + +
+ {text} +
+
{text}
+ + ); +} + +export default FeatureButton; diff --git a/src/components/features/Features.js b/src/components/features/Features.js new file mode 100644 index 00000000..5fdcf380 --- /dev/null +++ b/src/components/features/Features.js @@ -0,0 +1,21 @@ +import ButtonContainer from "./ButtonContainer"; +import FeatureButton from "./FeatureButton"; + +function Features({ featureList, index, ...props }) { + return ( + + {featureList.map((feature, idx) => ( + + ))} + + ); +} + +export default Features; diff --git a/src/components/lbe/LbeElements.js b/src/components/lbe/LbeElements.js index 3b436041..f35fb2e8 100644 --- a/src/components/lbe/LbeElements.js +++ b/src/components/lbe/LbeElements.js @@ -136,14 +136,4 @@ function FilterButton({ ); } -function LbeChip({ title }) { - return ( - - - - ); -} - -export { RepoButton, TextSearch, FilterButton, LbeChip }; +export { RepoButton, TextSearch, FilterButton }; diff --git a/src/css/BulletBox.module.css b/src/css/BulletBox.module.css new file mode 100644 index 00000000..32a2045a --- /dev/null +++ b/src/css/BulletBox.module.css @@ -0,0 +1,7 @@ +.bulletContainer { + display: flex; + flex-direction: row; + flex-wrap: wrap; + gap: 0.5rem; + justify-content: center; +} diff --git a/src/css/Features.module.css b/src/css/Features.module.css new file mode 100644 index 00000000..74709836 --- /dev/null +++ b/src/css/Features.module.css @@ -0,0 +1,37 @@ +/* N4C Feature styles */ + +.features { + display: flex; + flex-wrap: wrap; + justify-content: center; + margin: 1em; + width: 100%; +} + +.featureButton { + display: flex; + flex-direction: column; + align-items: center; + background-color: unset; + width: var(--n4c-button-width); + margin: var(--n4c-button-vpad); + font-size: 1.1rem; +} + +.featureButtonIndex { + border: none; +} + +.featureSvg { + display: flex; + justify-content: center; + padding: 2px; + width: 110px; + height: 110px; + margin-top: 5px; +} + +.featureButton * { + text-align: center; + white-space: normal; +} diff --git a/src/data/domains.js b/src/data/domains.js new file mode 100644 index 00000000..1c8e7e4d --- /dev/null +++ b/src/data/domains.js @@ -0,0 +1,31 @@ +import Translate from "@docusaurus/Translate"; + +const domains = [ + { + text: Analytical Chemistry, + imgUrl: "/img/nfdi4chem_Analytical_Chemistry.svg", + url: "/docs/analytical_chemistry", + }, + { + text: Electrochemistry, + imgUrl: "/img/nfdi4chem_Electrochemistry.svg", + url: "/docs/electrochemistry", + }, + { + text: Pharmaceutical Chemistry, + imgUrl: "/img/nfdi4chem_Medicinal-Pharmaceutical_Chemistry.svg", + url: "/docs/pharmaceutical_chemistry", + }, + { + text: Physical Chemistry, + imgUrl: "/img/nfdi4chem_Physial_Chemistry.svg", + url: "/docs/physical_chemistry", + }, + { + text: Synthetic Chemistry, + imgUrl: "/img/nfdi4chem_Synthetic_Chemistry.svg", + url: "/docs/synthetic_chemistry", + }, +]; + +export default domains; diff --git a/src/data/roles.js b/src/data/roles.js new file mode 100644 index 00000000..2f53c3d1 --- /dev/null +++ b/src/data/roles.js @@ -0,0 +1,31 @@ +import Translate from "@docusaurus/Translate"; + +const roles = [ + { + text: Research Group Leader, + imgUrl: "/img/nfdi4chem_Research_Group_Leader.svg", + url: "/docs/research_group_leader", + }, + { + text: Research Group Member, + imgUrl: "/img/nfdi4chem_Research_Group_Member.svg", + url: "/docs/research_group_member", + }, + { + text: Student, + imgUrl: "/img/nfdi4chem_Student.svg", + url: "/docs/student", + }, + { + text: Data Steward, + imgUrl: "/img/nfdi4chem_Data_Steward.svg", + url: "/docs/data_steward", + }, + { + text: Core Facility Manager, + imgUrl: "/img/nfdi4chem_Core_Facility_Manager.svg", + url: "/docs/core_facility_manager", + }, +]; + +export default roles; diff --git a/src/data/stakeholders.js b/src/data/stakeholders.js new file mode 100644 index 00000000..3d19370f --- /dev/null +++ b/src/data/stakeholders.js @@ -0,0 +1,21 @@ +import Translate from "@docusaurus/Translate"; + +const stakeholders = [ + { + text: Authors, + imgUrl: "/img/nfdi4chem_Research_Group_Member.svg", + url: "/docs/publishing_standards_authors", + }, + { + text: Academic Publishers, + imgUrl: "/img/nfdi4chem_Student.svg", + url: "/docs/publishing_standards_publishers", + }, + { + text: Infrastructure Providers, + imgUrl: "/img/nfdi4chem_Core_Facility_Manager.svg", + url: "/docs/publishing_standards_infrastructure", + }, +]; + +export default stakeholders; diff --git a/src/pages/index.js b/src/pages/index.js index 34d13c63..cf2771df 100644 --- a/src/pages/index.js +++ b/src/pages/index.js @@ -2,12 +2,41 @@ import React from "react"; import Layout from "@theme/Layout"; import Link from "@docusaurus/Link"; import useDocusaurusContext from "@docusaurus/useDocusaurusContext"; -import N4CFeatures from "../components/N4CFeatures"; +import Features from "@site/src/components/features/Features"; + import Translate from "@docusaurus/Translate"; import styles from "./index.module.css"; import clsx from "clsx"; +const features = [ + { + text: Domains, + imgUrl: "/img/nfdi4chem_Domains_white.svg", + url: "/docs/domain_guide", + }, + { + text: Roles, + imgUrl: "/img/nfdi4chem_Roles_white.svg", + url: "/docs/role_guide", + }, + { + text: Handling Data, + imgUrl: "/img/nfdi4chem_Handling_Data_white.svg", + url: "/docs/data_guide", + }, + { + text: Electronic Lab Notebooks, + imgUrl: "/img/nfdi4chem_SmartLab_white.svg", + url: "/docs/smartlab", + }, + { + text: Data Publishing, + imgUrl: "/img/nfdi4chem_Data_Publication_white.svg", + url: "/docs/data_publishing", + }, +]; + export default function Home() { const { siteConfig } = useDocusaurusContext(); return ( @@ -17,13 +46,7 @@ export default function Home() { >
-
-
-

- {siteConfig.title} -

-
-
+

{siteConfig.title}

@@ -33,18 +56,16 @@ export default function Home() {

-
-
- - Get started - -
+
+ + Get started +
- +
diff --git a/static/assets/lbe.json b/static/assets/lbe.json index a251a791..caa02db2 100644 --- a/static/assets/lbe.json +++ b/static/assets/lbe.json @@ -1,911 +1,1080 @@ [ - { - "title": "Hydrogen bond redistribution effects in mixtures of protic ionic liquids sharing the same cation: non-ideal mixing with large negative mixing enthalpies", - "authors": "Benjamin Golub, Daniel Ondo, Viviane Overbeck, Ralf Ludwig, Dietmar Paschek", - "journal": "Physical Chemistry Chemical Physics", - "pubyear": 2022, - "linkpub": "https://doi.org/10.1039/D2CP01209J", - "linkdata": [ - { - "name": "RosDok", - "url": "https://doi.org/10.18453/rosdok_id00003537" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, curated by the publishing authors, includes data from molecular dynamics simulations and was published in RosDok. The dataset also includes documentation on PDF format. The RosDok DOI is listed in the references of the corresponding publication.", - "subdiscipline": [ - "physical chemistry" - ], - "tags": [ - "physical chemistry" - ] - }, - { - "title": "Linderazulen aus einer invasiven Pflanze - Delphi und sein violettes Wunder", - "authors": "Nils Keltsch, Viola Munzert, Klaus-Peter Zeller, Hans-Ullrich Siehl, Stefan Berger, Dieter Sicker", - "journal": "Chemie in unserer Zeit", - "pubyear": 2019, - "linkpub": "https://doi.org/10.1002/ciuz.201900868", - "linkdata": [ - { - "name": "RADAR4Chem", - "url": "https://doi.org/10.22000/786" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/LMVGRKPOXLBIFQ-UHFFFAOYSA-N.1" - }, - { - "name": "nmrXiv", - "url": "https://doi.org/10.57992/nmrxiv.p2" - } - ], - "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", - "description": "The dataset, prepared for publication under the NFDI4Chem stewardship and published in RADAR4Chem contains NMR, MS, UV-VIS and IR data. NMR data are provided in vendor format, as JCAMP-DX (MNova) and NMRium format including NMReDATA (SDfile). MS data are available in vendor formats and open format mzML. IR and UV-VIS data are accessible in tabular files and in JCAMP-DX format. The structure information on Linderazulene and Charmazulene and further supplementary information are provided as tables and SDfiles. The corresponding article does not contain a reference to the dataset, as published some years before the dataset was published.", - "subdiscipline": [ - "organic chemistry", - "analytical chemistry" - ], - "tags": [ - "natural products", - "NMR spectroscopy" - ] - }, - { - "title": "Die Polei-Minze im Wandel der Zeiten", - "authors": "Agneta Prasse, Viola Munzert, Elena José, Klaus-Peter Zeller, Hans-Ullrich Siehl, Stefan Berger, Dieter Sicker", - "journal": "Chemie in unserer Zeit", - "pubyear": 2019, - "linkpub": "https://doi.org/10.1002/ciuz.201800860", - "linkdata": [ - { - "name": "RADAR4Chem", - "url": "https://doi.org/10.22000/785" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/NZGWDASTMWDZIW-MRVPVSSYSA-N.1" - }, - { - "name": "nmrXiv", - "url": "https://doi.org/10.57992/nmrxiv.p16" - } - ], - "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", - "description": "The dataset, prepared for publication under NFDI4Chem stewardship and published in RADAR4Chem, contains NMR, MS and UV-VIS data in the instrument manufacturers formats as well as in open formats such as JCAMP-DX for NMR and UV-VIS data and mzML for MS data. Analytical data of CD spectroscopy and MS spectrometry were exported as tabular files and are also provided as CSV files. The structure information on (R)-+-Pulegon and supplementary information are provided as tabular files and as as SDfiles. The corresponding article does not contain a reference to the dataset, as published some years before the dataset was published.", - "subdiscipline": [ - "organic chemistry", - "analytical chemistry" - ], - "tags": [ - "natural products", - "NMR spectroscopy" - ] - }, - { - "title": "Karminsäure - Das Rot aus Cochenilleläusen", - "authors": "Franziska Schulze, Juliane Titus, Peter Mettke, Stefan Berger, Hans-Ullrich Siehl, Klaus-Peter Zeller, Dieter Sicker", - "journal": "Chemie in unserer Zeit", - "pubyear": 2013, - "linkpub": "https://doi.org/10.1002/ciuz.201300634", - "linkdata": [ - { - "name": "RADAR4Chem", - "url": "https://doi.org/10.22000/795" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/DGQLVPJVXFOQEV-JNVSTXMASA-N.1" - }, - { - "name": "nmrXiv", - "url": "https://doi.org/10.57992/nmrxiv.p17" - } - ], - "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", - "description": "The dataset, prepared for publication under the NFDI4Chem stewardship and published in RADAR4Chem contains NMR, MS, UV-VIS and CD data. NMR data was previously published in NMRShiftDB2 and are provided in vendor format together with NMReDATA (SDfile). MS data were converted in several different formats including mzML. UV-VIS data are available as tabular files and in JCAMP-DX format. The structure information on carminic acid and further supplementary information are provided in tabular files and as SDfile. The corresponding article does not contain a reference to the dataset, as published some years before the dataset was published.", - "subdiscipline": [ - "organic chemistry", - "analytical chemistry" - ], - "tags": [ - "natural products", - "NMR spectroscopy" - ] - }, - { - "title": "Resolving the different bulk moduli within individual soft nanogels using small-angle neutron scattering", - "authors": "Judith Elizabeth Houston, Lisa Fruhner, Alexis de la Cotte, Javier Rojo González, Alexander Valerievich Petrunin, Urs Gasser, Ralf Schweins, Jürgen Allgaier, Walter Richtering, Alberto Fernandez-Nieves, Andrea Scotti", - "journal": "Science Advances", - "pubyear": 2022, - "linkpub": "https://doi.org/10.1126/sciadv.abn6129", - "linkdata": [ - { - "name": "RADAR4Chem", - "url": "https://doi.org/10.22000/604" - }, - { - "name": "ILL Data Portal", - "url": "http://doi.org/10.5291/ILL-DATA.9-11-2067" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset in RADAR4Chem, curated by the publishing authors, includes SANS data as tab separated text files. The corresponding article references the dataset in RADAR4Chem in the data and materials availability statement via its URL. Moreover, the article references a dataset in Institut Laue-Langevin (ILL) data portal repository via its DOI.", - "subdiscipline": [ - "physical chemistry" - ], - "tags": [ - "nanogels" - ] - }, - { - "title": "Manipulating electron transfer – the influence of substituents on novel copper guanidine quinolinyl complexes", - "authors": "Joshua Heck, Fabian Metz, Sören Buchenau, Melissa Teubner, Benjamin Grimm-Lebsanft, Thomas P. Spaniol, Alexander Hoffmann, Michael A. Rübhausen, Sonja Herres-Pawlis", - "journal": "Chemical Science", - "pubyear": 2022, - "linkpub": "https://doi.org/10.1039/D2SC02910C", - "linkdata": [ - { - "name": "RADAR4Chem", - "url": "https://doi.org/10.22000/613" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JHIAOWGCGN-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-XNDIRRNFWB-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-YLBKXSDEWV-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-MTPUXEIATO-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DYIBODSCVM-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-YSUUDYJLPD-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-BRNGTXITIQ-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-ACOFZHHYLN-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-QLLLYNCAUW-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-YKNRUBPOGQ-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-ZJSFNHZUYT-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-HXVOLPKNEJ-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-FYZDDQVKLM-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-AOATVJLAFL-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-XTTRESRELV-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-MCYXBNUZMI-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-NNDILYOKJA-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DMWOEMCLSH-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JZHZQROLCJ-UHFFFADPSC-NUHFF-MUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-FNFSJYCLRP-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-UMMQIWZYOP-UHFFFADPSC-NUHFF-LUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-GCLZBRQZKM-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-XYXSWFSTLI-UHFFFADPSC-NUHFF-LUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JBXRXORXEO-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-GQFHEVHUGU-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-UMXPYYQOWK-UHFFFADPSC-NUHFF-LUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JQDGMCVIMF-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DRQHCTISPL-UHFFFADPSC-NUHFF-LUHFF-NUHFF-ZZZ" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, curated by the publishing authors, includes reactions and sample data with its ATR-FTIP, HR-ESI-TOF-MS and 1H/13C NMR data published in Chemotion Repository. Data of DFT calculations is available in RADAR4Chem and referenced in the data availability statement of the corresponding publication. The supplementary information PDF, which reference datasets in Chemotion Repository via their DOI, and crystal structure data are available from the web page of the publisher. Please note that there were no Collection DOIs at the time of publication. Therefore, many dataset DOIs are reported.", - "subdiscipline": [ - "inorganic chemistry" - ], - "tags": [ - "copper complexes" - ] - }, - { - "title": "In-situ study of the impact of temperature and architecture on the interfacial structure of microgels", - "authors": "Steffen Bochenek, Fabrizio Camerin, Emanuela Zaccarelli, Armando Maestro, Maximilian M. Schmidt, Walter Richtering, Andrea Scotti", - "journal": "Nature Communications", - "pubyear": 2022, - "linkpub": "https://doi.org/10.1038/s41467-022-31209-3", - "linkdata": [ - { - "name": "RADAR4Chem", - "url": "https://doi.org/10.22000/603" - }, - { - "name": "ILL Data Portal", - "url": "https://doi.org/10.5291/ILL-DATA.EASY-462" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The datasets, curated by the publishing authors, includes raw, associated, and derived data of NR, DLS, AFM and SANS supporting the reported results. RADAR DOI as well as ePIC for archived dataset, identical to published dataset, are given in the data availability statement. The RADAR DOI is also listed listed in the references of the corresponding publication. The NR raw data used in the study are available in the ILL Data Portal repository.", - "subdiscipline": [ - "physical chemistry" - ], - "tags": [ - "macromolecules" - ] - }, - { - "title": "A risk based assessment approach for chemical mixtures from wastewater treatment plant effluents", - "authors": "Saskia Finckh, Liza-Marie Beckers, Wibke Busch, Eric Carmona, Valeria Dulio, Lena Kramer, Martin Krauss, Leo Posthuma, Tobias Schulze, Jaap Slootweg, Peter C. von der Ohe, Werner Brack", - "journal": "Environment International", - "pubyear": 2022, - "linkpub": "https://doi.org/10.1016/j.envint.2022.107234", - "linkdata": [ - { - "name": "Pangaea", - "url": "https://doi.pangaea.de/10.1594/PANGAEA.940755" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, curated by the publishing authors, includes results data, raw MS files, and processing data (MZmine, MZquant, Tracefinder) in Pangaea – a repository for geospatial data and environmental chemistry. Supplementary material of the corresponding publication includes a word document and a excel document.", - "subdiscipline": [ - "organic chemistry", - "analytical chemistry", - "environmental chemistry" - ], - "tags": [ - "mass spectrometry" - ] - }, - { - "title": "Improving the screening analysis of pesticide metabolites in human biomonitoring by combining high-throughput in vitro incubation and automated LC−HRMS data processing", - "authors": "Carolin Huber, Erik Müller, Tobias Schulze, Werner Brack, and Martin Krauss", - "journal": "Analytical Chemistry", - "pubyear": 2021, - "linkpub": "https://doi.org/10.1021/acs.analchem.1c00972", - "linkdata": [ - { - "name": "MetaboLights", - "url": "https://www.ebi.ac.uk/metabolights/MTBLS2402/descriptors" - }, - { - "name": "MassBank EU", - "url": "https://github.com/MassBank/MassBank-data/commit/691fe2429e33c883e56d5234277a6586a128cc5c" - }, - { - "name": "GitHub", - "url": "https://github.com/chufz/incubatoR" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, curated by the publishing authors, contain MS data and were published in MetaboLight, Massbank and MassBank-data/GitHub. All raw mass spectra were converted to the open format mzML format. The used code is available at GitHub and were referenced in the corresponding article.", - "subdiscipline": [ - "organic chemistry", - "analytical chemistry", - "metabolomics", - "epidemiology" - ], - "tags": [ - "mass spectrometry" - ] - }, - { - "title": "Desymmetrization strategy to achieve triptycene-based 3,6-dimethoxytriphenylenes via oxidative cyclodehydrogenation", - "authors": "Dennis Reinhard, Frank Rominger, Michael Mastalerz", - "journal": "European Journal of Organic Chemistry", - "pubyear": 2020, - "linkpub": "https://doi.org/10.1002/ejoc.202001073", - "linkdata": [ - { - "name": "heiDATA", - "url": "https://doi.org/10.11588/data/OH6757" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc25v89m" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The datasets, curated by the publishing authors, published in heiData, contains data of NMR, MS, IR in the instrument manufacturers formats.The IR data is also available in TSV format. Elemental analysis data is provided as JPG. Crystallographic data as CIF are available from CSD. References to a dataset in CSD is given in the supporting information PDF of the corresponding scientific publication.", - "subdiscipline": [ - "organic chemistry" - ], - "tags": [ - "Triptycene" - ] - }, - { - "title": "A dataset of 255,000 randomly selected and manually classified extracted ion chromatograms for evaluation of peak detection methods ", - "authors": "Erik Müller, Carolin Huber, Liza-Marie Beckers, Werner Brack, Martin Krauss, Tobias Schulze", - "journal": "Metabolites", - "pubyear": 2020, - "linkpub": "https://doi.org/10.3390/metabo10040162", - "linkdata": [ - { - "name": "Zenodo", - "url": "https://doi.org/10.5281/zenodo.3756211" - }, - { - "name": "MetaboLights", - "url": "https://www.ebi.ac.uk/metabolights/editor/MTBLS1455" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, curated by the publishing authors, contains 255.000 extracted ion chromatograms (EICs or XICs) of 5000 peaks randomly sampled from across 51 environmental water samples for the evaluation on peak detection and gap filling algorithms. The scientific publication references the dataset in Zenodo in its data availability statement.", - "subdiscipline": [ - "organic chemistry", - "analytical chemistry", - "cheminformatics" - ], - "tags": [ - "mass spectrometry" - ] - }, - { - "title": "Systematic evaluation of the biological variance within the Raman based colorectal tissue diagnostics", - "authors": "Nadine Vogler, Thomas Bocklitz, Firas Subhi Salah, Carsten Schmidt, Rolf Brauer, Tiantian Cui, Masoud Mireskandari, Florian R. Greten, Michael Schmitt, Andreas Stallmach, Iver Petersen, Jürgen Popp", - "journal": "Journal of Biophotonics", - "pubyear": 2015, - "linkpub": "https://doi.org/10.1002/jbio.201500237", - "linkdata": [ - { - "name": "Zenodo", - "url": "https://zenodo.org/record/3905058" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, prepared for publication by the publishing authors, contains MS data and RAMAN spectral data in CSV format. Moreover, CSVs with information on samples, gene activity, tissue type and more ara available. The corresponding scientific publication does not reference the dataset in Zenodo via its DOI.", - "subdiscipline": [ - "medicinal chemistry", - "chemometric", - "physical chemistry" - ], - "tags": [ - "raman spectroscopy", - "biomedical diagnostics" - ] - }, - { - "title": "Comparability of Raman spectroscopic configurations: A large scale cross-laboratory study", - "authors": "Shuxia Guo, Claudia Beleites, Ute Neugebauer, Sara Abalde-Cela, Nils Kristian Afseth, Fatima Alsamad, Suresh Anand, Cuauhtemoc Araujo-Andrade, Sonja Aškrabić, Ertug Avci, Monica Baia, Malgorzata Baranska, Enrico Baria, Luis A. E. Batista de Carvalho, Philippe de Bettignies, Alois Bonifacio, Franck Bonnier, Eva Maria Brauchle, Hugh J. Byrne, Igor Chourpa, Riccardo Cicchi, Frederic Cuisinier, Mustafa Culha, Marcel Dahms, Catalina David, Ludovic Duponchel, Shiyamala Duraipandian, Samir F. El-Mashtoly, David I. Ellis, Gauthier Eppe, Guillaume Falgayrac, Ozren Gamulin, Benjamin Gardner, Peter Gardner, Klaus Gerwert, Evangelos J. Giamarellos-Bourboulis, Sveinbjorn Gizurarson, Marcin Gnyba, Royston Goodacre, Patrick Grysan, Orlando Guntinas-Lichius, Helga Helgadottir, Vlasta Mohaček Grošev, Catherine Kendall, Roman Kiselev, Micha Kölbach, Christoph Krafft, Sivashankar Krishnamoorthy, Patrick Kubryck, Bernhard Lendl, Pablo Loza-Alvarez, Fiona M. Lyng, Susanne Machill, Cedric Malherbe, Monica Marro, Maria Paula M. Marques, Ewelina Matuszyk, Carlo Francesco Morasso, Myriam Moreau, Howbeer Muhamadali, Valentina Mussi, Ioan Notingher, Marta Z. Pacia, Francesco S. Pavone, Guillaume Penel, Dennis Petersen, Olivier Piot, Julietta V. Rau, Marc Richter, Maria Krystyna Rybarczyk, Hamideh Salehi, Katja Schenke-Layland, Sebastian Schlücker, Markus Schosserer, Karin Schütze, Valter Sergo, Faris Sinjab, Janusz Smulko, Ganesh D. Sockalingum, Clara Stiebing, Nick Stone, Valérie Untereiner, Renzo Vanna, Karin Wieland, Jürgen Popp, and Thomas Bocklitz*", - "journal": "Analytical Chemistry", - "pubyear": 2020, - "linkpub": "https://doi.org/10.1021/acs.analchem.0c02696", - "linkdata": [ - { - "name": "Zenodo", - "url": "https://zenodo.org/record/4152953" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, prepared for publication by the publishing authors, contains slightly processed raw data split in wavenumber axis files (wy_XYZ), spectral intensity files (spec_XYZ) and metadata files (meta_XYZ) – all in CSV format. The corresponding scientific publication references the dataset in Zenodo via its DOI.", - "subdiscipline": [ - "analytical chemistry" - ], - "tags": [ - "raman spectroscopy" - ] - }, - { - "title": "A triptycene-based enantiopure bis(diazadibenzoanthracene) by a chirality-assisted synthesis approach", - "authors": "Xubin Wang, Bernd Kohl, Frank Rominger, Sven M. Elbert, Prof. Michael Mastalerz", - "journal": "Chemistry – A European Journal", - "pubyear": 2020, - "linkpub": "https://doi.org/10.1002/chem.202002781", - "linkdata": [ - { - "name": "heiDATA", - "url": "https://doi.org/10.11588/data/46LINE" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc25b961" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc25b972" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The datasets, curated by the publishing authors, contain NMR, MS and IR data in the instrument manufacturers formats. The IR data is also availabe as data point table (DPT) files. Data of elemental analysis was added to the dataset as scans of analysis reports. Crystallographic data as CIF files are available from CSD. References to datasets in CSD are given in the supporting information PDF of the corresponding article, while the dataset in heiDATA is not referenced in the scientific publication or supporting information.", - "subdiscipline": [ - "organic chemistry" - ], - "tags": [ - "N-heteropolycyclenes" - ] - }, - { - "title": "Bicyclo[1.1.1]pentyl sulfoximines: synthesis and functionalizations", - "authors": "Robin M. Bär, Lukas Langer, Martin Nieger, Stefan Bräse", - "journal": "Advanced Synthesis & Catalysis", - "pubyear": 2020, - "linkpub": "https://doi.org/10.1002/adsc.201901453", - "linkdata": [ - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23hkz5" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23hl07" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23hl18" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23hl29" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23hl3b" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23hl4c" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23hl5d" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23hl6f" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The datasets, curated by the publishing authors, contains NMR data in the instrument manufacturers formats and is also provided by Chemotion Repository in the open format JCAMP-DX. Crystallographic data as CIF are available from CSD. References to datasets in CSD are given in the supporting information PDF of the corresponding article via CSD numbers.", - "subdiscipline": [ - "organic chemistry", - "analytical chemistry" - ], - "tags": [ - "organic synthesis", - "heterocycles" - ] - }, - { - "title": "Exploring the role of solvent on carbohydrate−aryl interactions by diffusion NMR-based studies", - "authors": "Linda Jütten, Karla Ramírez-Gualito, Andreas Weilhard, Benjamin albrecht, Gabriel Cuevas, María del Carmen Fernández-Alonso, Jesús Jiménez-Barbero, Nils E. Schlörer, Dolores Diaz", - "journal": "ACS Omega", - "pubyear": 2018, - "linkpub": "https://doi.org/10.1021/acsomega.7b01630", - "linkdata": [ - { - "name": "NMRShiftDB2", - "url": "http://www.nmrshiftdb.org/molecule/60004029" - }, - { - "name": "NMRShiftDB2", - "url": "http://www.nmrshiftdb.org/molecule/60004074" - }, - { - "name": "NMRShiftDB2", - "url": "http://www.nmrshiftdb.org/molecule/60004071" - }, - { - "name": "NMRShiftDB2", - "url": "http://www.nmrshiftdb.org/molecule/60004072" - }, - { - "name": "NMRShiftDB2", - "url": "http://www.nmrshiftdb.org/molecule/60004073" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The NMR datasets, curated by the publishing authors, was published in NMRShiftDB2. References to the dataset is given via DOI in the supporting information PDF.", - "subdiscipline": [ - "analytical chemistry" - ], - "tags": [ - "Carbohydrates", - "NMR spectroscopy" - ] - }, - { - "title": "A new generation of terminal copper nitrenes and their application in aromatic C–H amination reactions", - "authors": "Fabian Thomas, Matthias Oster, Florian Schön, Kai C. Göbgen, Benedikt Amarouch, Dominik Steden, Alexander Hoffmann, Sonja Herres-Pawlis", - "journal": "Dalton Transactions", - "pubyear": 2021, - "linkpub": "https://doi.org/10.1039/D1DT00832C", - "linkdata": [ - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/UFNYJPFRGDSKSE-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/LSGGPBYVWWQPOY-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/AXGNYRCNCNZKKZ-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/ZXFVPDKZHCLOHM-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/MHRJPVSEKXPPCE-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/FONYBVKTMVEXPM-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/BJUATVHTJTTWSW-UHFFFAOYSA-H.1" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23w7mw" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23w7nx" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23w7py" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23w7qz" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23w7r0" - }, - { - "name": "ioChemDB", - "url": "https://doi.org/10.19061/iochem-bd-6-84" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The datasets, curated by the publishing authors, contain NMR data in the instrument manufacturers formats and is also provided by Chemotion Repository in the open format JCAMP-DX. Crystallographic data as CIF files are available from CSD and computational data was deposited in ioChem-DB. References to the crystallographic data is given in the section on supporting information in the corresponding publication. References on NMR data can be retrieved from the supplementary information PDF. Please note that there were no Collection DOIs at the time of publication. Therefore, many dataset DOIs are reported.", - "subdiscipline": [ - "inorganic chemistry" - ], - "tags": [ - "inorganic synthesis" - ] - }, - { - "title": "Exceptional substrate diversity in oxygenation reactions catalyzed by a bis(µ-oxo) copper complex", - "authors": "Melanie Paul, Melissa Teubner, Benjamin Grimm-Lebsanft, Christiane Golchert, Yannick Meiners, Laura Senft, Kristina Keisers, Patricia Liebhäuser, Thomas Rösener, Florian Biebl, Sören Buchenau, Maria Naumova, Vadim Murzin, Roxanne Krug, Alexander Hoffmann, Jörg Pietruszka, Ivana Ivanovic-Burmazovic, Michael Rübhausen, Sonja Herres-Pawlis ", - "journal": "Chemistry – A European Journal", - "pubyear": 2020, - "linkpub": "https://doi.org/10.1002/chem.202000664", - "linkdata": [ - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/FCAMUPIRWKNASD-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/XQWHZHODENELCJ-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/WYPRQDLUGJFJCG-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/SXYROFUQPFOADI-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/NLACLAPNGFWSTA-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/WOMQOOHUINDJRV-UHFFFAOYSA-M.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/WOMQOOHUINDJRV-UHFFFAOYSA-M.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/SQELSYLGCLCOLU-UHFFFAOYSA-M.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/SEXRCKWGFSXUOO-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/JJGCDLVZJZGHBZ-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/ODJOHIWKLOPSFF-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/AEFJLSGXOWZNJZ-UHFFFAOYSA-N.1" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/BMNLXKVRGRRHKW-UHFFFAOYSA-N.1" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23gtbr" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23gtcs" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23gtdt" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23gtfv" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc23wtb5" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The datasets, curated by the publishing authors, contain NMR data in the instrument manufacturers formats and is also provided by Chemotion Repository in the open format JCAMP-DX. Crystallographic data as .cif files are available from CSD. References to datasets in Chemotion Repository are given in the supporting information PDF of the corresponding article via DOIs, while datasets in CSD were referenced with their CCDC accession number. Please note that there were no Collection DOIs at the time of publication. Therefore, many dataset DOIs are reported.", - "subdiscipline": [ - "inorganic chemistry" - ], - "tags": [ - "copper complexes" - ] - }, - { - "title": "Synthesis and biological evaluation of highly potent fungicidal deoxy-hygrophorones", - "authors": "Toni Ditfe, Eileen Bette, Haider N. Sultani, Alexander Otto, Ludger A. Wessjohann, Norbert Arnold, Bernhard Westermann", - "journal": "European Journal of Organic Chemistry", - "pubyear": 2021, - "linkpub": "https://doi.org/10.1002/ejoc.202100729", - "linkdata": [ - { - "name": "RADAR", - "url": "https://doi.org/10.22000/451" - }, - { - "name": "nmrXiv", - "url": "https://doi.org/10.57992/nmrxiv.p57" - } - ], - "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", - "description": "The dataset, prepared for publication under NFDI4Chem stewardship and published in RADAR, contains NMR and MS data in the instrument manufacturers formats as well as in open formats such as JCAMP-DX, NMReDATA (Mnova 14.1.1) for NMR data and mzML for MS data. Results from the bioassay are available as tabular files and as CSV. Additionally, all structures are provided as CTfiles and are listed, corresponding to their numbering in the publication, in a CSV also including IPB 3LC lab journal entries, SMILES structure codes and InChI and InChIKey identifiers. The corresponding scientific article references the dataset in the section on supporting information.", - "subdiscipline": [ - "organic chemistry", - "natural product chemistry" - ], - "tags": [ - "natural products" - ] - }, - { - "title": "5α-Cyprinol sulfate: complete NMR assignment and revision of earlier published data, including the submission of a computer-readable assignment in NMReDATA format", - "authors": "Meike Hahn, Eric von Elert, Laurent Bigler, M. Dolores Díaz Hernández, Nils E. Schloerer", - "journal": "Magnetic Resonance in Chemistry", - "pubyear": 2018, - "linkpub": "https://doi.org/10.1002/mrc.4782", - "linkdata": [ - { - "name": "NMRShiftDB2", - "url": "https://doi.org/10.18716/nmrshiftdb2/60004113/nmredata_mrc_cd3od" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, curated by the publishing authors, is published in NMRShiftDB2 and also available from the publisher as supporting material. References to the dataset is given via DOI in the supporting information MS word document.", - "subdiscipline": [ - "organic chemistry", - "natural product chemistry" - ], - "tags": [ - "natural products", - "NMR spectroscopy" - ] - }, - { - "title": "Modular Synthesis of New Pyrroloquinoline Quinone Derivatives", - "authors": "Rachel Janßen, Violeta A. Vetsova, Dominik Putz, Peter Mayer, Lena J. Daumann", - "journal": "Synthesis", - "pubyear": 2023, - "linkpub": "https://doi.org/10.1055/s-0041-1738426", - "linkdata": [ - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/collection/RAJ_2022-08-25" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, curated by the publishing authors, was awarded with the FAIR4Chem Award 2023.", - "subdiscipline": [ - "organic chemistry" - ], - "tags": [ - "organic synthesis" - ] - }, - { - "title": "Predictive design of ordered mesoporous silica with well-defined, ultra-large mesopores", - "authors": "Charlotte Vogler, Stefan Naumann, Johanna R. Bruckner", - "journal": "Molecular Systems Design & Engineering", - "pubyear": 2022, - "linkpub": "https://doi.org/10.1039/D2ME00107A", - "linkdata": [ - { - "name": "DaRus", - "url": "https://doi.org/10.18419/darus-2374" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The dataset, curated by the publishing authors, was awarded with the FAIR4Chem Award 2023.", - "subdiscipline": [ - "physical chemistry", - "polymer chemistry", - "material science" - ], - "tags": [ - "mesoporous silica" - ] - }, - { - "title": "Modular Synthesis of trans-A2B2-Porphyrins with Terminal Esters: Systematically Extending the Scope of Linear Linkers for Porphyrin-Based MOFs", - "authors": "Stefan M. Marschner, Ritesh Haldar, Olaf Fuhr, Christof Wöll, Stefan Bräse", - "journal": "Chemistry – A European Journal", - "pubyear": 2020, - "linkpub": "https://doi.org/10.1002/chem.202003885", - "linkdata": [ - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-PBTPREHATA-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ.4" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-BHYVHYPBRY-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-QKHPYPUCYC-UHFFFADPSC-NUHFF-NHYOA-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DJGWMTKKMO-UHFFFADPSC-NUHFF-NNYHH-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-CQICNQVIXS-UHFFFADPSC-NUHFF-NKDHF-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-UYKMRQXETK-UHFFFADPSC-NUHFF-NWLSV-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DVNRJSFZLK-UHFFFADPSC-NUHFF-NWLSV-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-LVGOHACWPD-UHFFFADPSC-NUHFF-NUVBP-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JQQMHNZHWI-UHFFFADPSC-NUHFF-NNSBK-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DJCDFXZBRU-UHFFFADPSC-NUHFF-NOCLW-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-LLIFZWKYAN-UHFFFADPSC-NUHFF-NHDGP-NUHFF-ZZZ" - }, - { - "name": "Chemotion Repository", - "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-LHQKMJBXIU-UHFFFADPSC-NUHFF-NLTSL-NUHFF-ZZZ" - }, - { - "name": "CSD/CCDC", - "url": "https://doi.org/10.5517/ccdc.csd.cc216k3y" - } - ], - "linkcomment": "curated by the publishing authors", - "description": "The datasets, curated by the publishing authors, were published in CSD and Chemotion Repository. Please note, that Collection DOIs did not exist at the time of publication. Hence, many dataset DOIs are reported.", - "subdiscipline": [ - "organic chemistry" - ], - "tags": [ - "porphyrins" - ] - }, - { - "title": "Antimicrobial Prenylated Isoflavones from the Leaves of the Amazonian Medicinal Plant Vatairea guianensis Aubl.", - "authors": "Serhat S. Çiçek, Mayra Galarza Pérez, Arlette Wenzel-Storjohann, Roberto M. Bezerra, Jorge F. O. Segovia, Ulrich Girreser, Isamu Kanzaki, and Deniz Tasdemir", - "journal": "Journal of Natural Products", - "pubyear": 2022, - "linkpub": "https://doi.org/10.1021/acs.jnatprod.1c01035", - "linkdata": [ - { - "name": "RADAR4Chem", - "url": "https://doi.org/10.22000/1865" - }, - { - "name": "nmrXiv", - "url": "https://doi.org/10.57992/nmrxiv.p55" - } - ], - "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", - "description": "The dataset, prepared for publication under NFDI4Chem stewardship and published in RADAR4Chem as well as nmrXiv, includes NMR, IR and MS data in the instrument manufacturers' formats as well as in open formats such as JCAMP-DX (TopSpin 4.3) for NMR data and mzML for MS data. UV-VIS spectra are only available as PDF format, due to challenges with data export, and all chemical structures are provided as Molfiles and listed in a CSV according to their numbering in the publication, including local sample identifiers, SMILES structure codes, and InChI and InChIKey identifiers. A markdown README and a rendered HTML version provide an entry point for human readers. The corresponding scientific article does not reference the dataset as it was published one year before the dataset was published.", - "subdiscipline": [ - "organic chemistry" - ] - } -] \ No newline at end of file + { + "title": "Adsorption of light gases in covalent organic frameworks: comparison of classical density functional theory and grand canonical Monte Carlo simulations", + "authors": "Christopher Keßler, Johannes Eller, Joachim Gross, Niels Hansen", + "journal": "Microporous and Mesoporous Materials", + "pubyear": 2021, + "linkpub": "https://doi.org/10.1016/j.micromeso.2021.111263", + "linkdata": [ + { + "name": "DaRUS", + "url": "https://doi.org/10.18419/darus-1775" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "This dataset was the winner of the FAIR4Chem Award 2022. Curated by the publishing authors, it contains PC-SAFT-based classical DFT calculations and grand canonical Monte Carlo simulations for adsorption of methane, ethane, n-butane, nitrogen, and their binary mixtures in the COFs TpPa-1 and 2,3-DhaTph up to 50 bar, showing excellent agreement and selective enrichment of longer hydrocarbons.", + "subdiscipline": [ + "physical chemistry", + "materials science", + "chemical engineering" + ], + "tags": [ + "covalent organic frameworks", + "adsorption", + "classical DFT", + "GCMC", + "PC-SAFT" + ] + }, + { + "title": "Electronic Structure of a Diiron Complex", + "authors": "Mario Winkler, Marc Schnierle, Felix Ehrlich, Kim-Isabelle Mehnert, David Hunger, Alena M. Sheveleva, Lukas Burkhardt, Matthias Bauer, Floriana Tuna, Mark R. Ringenberg, Joris van Slageren", + "journal": "Inorganic Chemistry", + "pubyear": 2021, + "linkpub": "https://doi.org/10.1021/acs.inorgchem.0c03259", + "linkdata": [ + { + "name": "DaRUS", + "url": "https://doi.org/10.18419/darus-1410" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, accompanies a multitechnique study of the diiron complex [(dppf)Fe(CO)3]0/+ using magnetic circular dichroism, X-ray absorption/emission, high-frequency EPR, and Mössbauer spectroscopy to pinpoint oxidation at the carbonyl iron center and characterize low-spin iron(I) with slow spin dynamics.", + "subdiscipline": [ + "inorganic chemistry", + "physical chemistry", + "spectroscopy" + ], + "tags": [ + "diiron complex", + "EPR", + "Mössbauer", + "X-ray spectroscopy", + "spin dynamics" + ] + }, + { + "title": "Dynamic Modelling of Phosphorolytic Cleavage Catalyzed by Pyrimidine-Nucleoside Phosphorylase", + "authors": "Robert T. Giessmann, Niels Krausch, Felix Kaspar, Mariano Nicolas Cruz Bournazou, Anke Wagner, Peter Neubauer, Matthias Gimpel", + "journal": "Processes", + "pubyear": 2019, + "linkpub": "https://doi.org/10.3390/pr7060380", + "linkdata": [ + { + "name": "Zenodo", + "url": "https://doi.org/10.5281/zenodo.3243352" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "This dataset was the winner of the FAIR4Chem Award 2022. Curated by the publishing authors, it contains UV/Vis time-course measurements used to build an ODE-based dynamic model for phosphorolytic cleavage of deoxythymidine by pyrimidine-nucleoside phosphorylase. It captures full reaction trajectories to equilibrium for substrate/product pairs and underpins kinetic parameterization and validation of the reversible enzymatic model.", + "subdiscipline": [ + "biochemical engineering", + "enzymology", + "process modeling" + ], + "tags": [ + "pyrimidine-nucleoside phosphorylase", + "dynamic modeling", + "UV/Vis", + "enzyme kinetics", + "ODE model" + ] + }, + { + "title": "FAIR and scalable management of small-angle X-ray scattering data", + "authors": "Torsten Giess, Selina Itzigehl, Jan Range, Richard Schömig, Johanna R. Bruckner, Jürgen Pleiss", + "journal": "Journal of Applied Crystallography", + "pubyear": 2023, + "linkpub": "https://doi.org/10.1107/S1600576723001577", + "linkdata": [ + { + "name": "DaRUS", + "url": "https://doi.org/10.18419/darus-2842" + }, + { + "name": "GitHub", + "url": "https://github.com/FAIRChemistry/SAS_toolbox/releases/tag/v1.0.0" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, packages the SAS-tools Python workflow (pyAnIML, easyDataverse, Jupyter) for FAIR management of small-angle X-ray scattering data, including raw SAXS measurements, AnIML metadata, OMEX archives, and analysis scripts applied to alkyltrimethylammonium surfactant phase diagrams varying chain length and counterions.", + "subdiscipline": [ + "physical chemistry", + "analytical chemistry", + "research data management" + ], + "tags": [ + "SAXS", + "FAIR data", + "AnIML", + "Dataverse", + "surfactant phase diagrams" + ] + }, + { + "title": "Axial Diffusion in Liquid-Saturated Cylindrical Silica Pore Models", + "authors": "Hamzeh Kraus, Marc Högler, Niels Hansen", + "journal": "The Journal of Physical Chemistry C", + "pubyear": 2023, + "linkpub": "https://doi.org/10.1021/acs.jpcc.3c01974", + "linkdata": [ + { + "name": "DaRUS", + "url": "https://doi.org/10.18419/darus-3067" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, contains molecular dynamics simulations of 5 nm cylindrical silica mesopores saturated with 14 solvents. It provides trajectories and analyses for self-diffusion via Einstein MSD fits and discretized Smoluchowski diffusion, quantifying bulk-to-pore diffusion ratios of ~2–3 and assessing confinement effects for crystalline vs. amorphous silica pores.", + "subdiscipline": [ + "physical chemistry", + "materials science", + "computational chemistry" + ], + "tags": [ + "mesoporous silica", + "molecular dynamics", + "self-diffusion", + "confinement", + "Smoluchowski diffusion" + ] + }, + { + "title": "Database of Raman and ATR-FTIR spectra of weathered and biofouled polymers", + "authors": "Robin Lenz, Franziska Fischer, Melinda Arnold, Verónica Fernández-González, Carmen María Moscoso Pérez, José Manuel Andrade-Garda, Soledad Muniategui-Lorenzo, Dieter Fischer", + "journal": "Zenodo", + "pubyear": 2023, + "linkpub": "https://doi.org/10.5281/zenodo.8314801", + "linkdata": [ + { + "name": "GitHub", + "url": "https://github.com/robna/MPX_specDB" + }, + { + "name": "RADAR4Chem", + "url": "https://doi.org/10.22000/1820" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "This dataset was the winner of the FAIR4Chem Award 2024. Curated by the publishing authors, it is a spectroscopic library containing Raman and ATR-FTIR spectra of weathered and biofouled polymers collected from the marine environment. Spectroscopic data derived from in situ experiments with 10 different polymers deployed across five geographical locations and immersed for varying intervals over four seasons. Metadata and individual spectra are accessible via an interactive web application and as downloadable files.", + "subdiscipline": [ + "analytical chemistry", + "polymer science", + "environmental chemistry" + ], + "tags": [ + "Raman spectroscopy", + "ATR-FTIR", + "microplastics", + "weathering", + "biofouling", + "polymers" + ] + }, + { + "title": "Diiminium Nucleophile Adducts Are Stable and Convenient Strong Lewis Acids", + "authors": "Niklas Bormann, Jas S. Ward, Ann Kathrin Bergmann, Paula Wenz, Kari Rissanen, Yiwei Gong, Wolf-Benedikt Hatz, Alexander Burbaum, Florian F. Mulks", + "journal": "Chemistry – A European Journal", + "pubyear": 2023, + "linkpub": "https://doi.org/10.1002/chem.202302089", + "linkdata": [ + { + "name": "iO-Chem BD", + "url": "https://doi.org/10.19061/iochem-bd-6-233" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, contains synthesis and characterization data of diiminium nucleophile adducts as stable and convenient strong Lewis acids. The study includes X-ray crystallographic data, spectroscopic analysis, and reactivity studies demonstrating applications in fluoride, hydride, and oxide abstraction reactions.", + "subdiscipline": ["organic chemistry", "catalysis"], + "tags": ["Lewis acids", "fluoride abstraction", "synthetic chemistry"] + }, + { + "title": "Making Photocatalysis Comparable Using a Modular and Characterized Open-Source Photoreactor", + "authors": "Daniel Kowalczyk, Pengcheng Li, Amir Abbas, Jonas Eichhorn, Philipp Buday, Magdalena Heiland, Andrea Pannwitz, Felix H. Schacher, Wolfgang Weigand, Carsten Streb, Dirk Ziegenbalg", + "journal": "ChemPhotoChem", + "pubyear": 2022, + "linkpub": "https://doi.org/10.1002/cptc.202200044", + "linkdata": [ + { + "name": "GitHub", + "url": "https://github.com/photonZfeed/modularPhotoreactor" + }, + { + "name": "Zenodo", + "url": "https://doi.org/10.5281/zenodo.5614942" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "This dataset was the winner of the FAIR4Chem Award 2025. Curated by the publishing authors, it includes detailed documentation and characterization data of a modular, open-source photoreactor platform for reproducible photocatalytic experiments. The dataset provides comprehensive technical specifications, assembly instructions, and standardized procedures enabling comparable photocatalysis research across different laboratories.", + "subdiscipline": ["organic chemistry", "catalysis"], + "tags": ["photocatalysis", "open-source", "photoreactor"] + }, + { + "title": "Why alloying with noble metals does not decrease the oxidation of platinum: a DFT-based ab initio thermodynamics study", + "authors": "Alexander Kafka, Franziska Hess", + "journal": "Physical Chemistry Chemical Physics", + "pubyear": 2024, + "linkpub": "https://doi.org/10.1039/D4CP01807A", + "linkdata": [ + { + "name": "NOMAD", + "url": "https://dx.doi.org/10.17172/NOMAD/2024.08.21-1" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, contains computational data from density functional theory (DFT) calculations and ab initio thermodynamics investigating the bulk stability of platinum alloys (Pt–Au, Pt–Ir, Pt–Re, Pt–W, Pt–Ag, Pt–Rh, Pt–Cu, Pt–Ni, and Pt–Co) and their oxides. The study explores strategies to reduce platinum oxidation and corrosion through alloying, demonstrating that platinum and oxygen affinity of the alloying metal are correlated. Copper was identified as a promising candidate for stabilizing platinum catalysts in the Ostwald process.", + "subdiscipline": ["physical chemistry", "materials science", "catalysis"], + "tags": [ + "platinum alloys", + "DFT calculations", + "thermodynamics", + "catalysis", + "corrosion" + ] + }, + { + "title": "Autonomous Battery Optimization by Deploying Distributed Experiments and Simulations", + "authors": "Monika Vogler, Simon Krarup Steensen, Francisco Fernando Ramírez, Leon Merker, Jonas Busk, Johan Martin Carlsson, Laura Hannemose Rieger, Bojing Zhang, François Liot, Giovanni Pizzi, Felix Hanke, Eibar Flores, Hamidreza Hajiyani, Stefan Fuchs, Alexey Sanin, Miran Gaberšček, Ivano Eligio Castelli, Simon Clark, Tejs Vegge, Arghya Bhowmik, Helge Sören Stein", + "journal": "Advanced Energy Materials", + "pubyear": 2024, + "linkpub": "https://doi.org/10.1002/aenm.202403263", + "linkdata": [ + { + "name": "Materials Cloud", + "url": "https://doi.org/10.24435/materialscloud:qt-1s" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, contains data from the FINALES framework for autonomous battery optimization using distributed experiments and simulations. The dataset includes electrolyte formulation data, computational simulation results, and end-of-life prediction models demonstrating automated approaches combining experimental and computational battery research methods.", + "subdiscipline": ["physical chemistry", "materials science"], + "tags": ["battery materials", "autonomous optimization", "machine learning"] + }, + { + "title": "Allantofuranone Biosynthesis and Precursor-Directed Mutasynthesis of Hydroxylated Analogues", + "authors": "Carsten Wieder, Claudia Simon-Sánchez, Johannes C. Liermann, Rainer Wiechert, Karsten Andresen, Eckhard Thines, Till Opatz, Anja Schüffler", + "journal": "Journal of Natural Products", + "pubyear": 2025, + "linkpub": "https://doi.org/10.1021/acs.jnatprod.5c00197", + "linkdata": [ + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/collection/JCL_2025-02-05" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The publication deals with genome mining and heterologous biosynthesis experiments in Aspergillus oryzae, elucidating the biosynthetic pathway of allantofuranone and related compounds. The dataset, curated by the authors, published in Chemotion Repository includes analytical data of natural products and pathway intermediates obtained through biosynthetic reconstitution and precursor-directed mutasynthesis, demonstrating the production of hydroxylated analogues including the new natural products deoxyascocorynin, hydroxyterferol, and hydroxyallantofuranone.", + "subdiscipline": ["organic chemistry", "natural products chemistry"], + "tags": ["biosynthesis", "natural products", "genome mining"] + }, + { + "title": "Hydrogen bond redistribution effects in mixtures of protic ionic liquids sharing the same cation: non-ideal mixing with large negative mixing enthalpies", + "authors": "Benjamin Golub, Daniel Ondo, Viviane Overbeck, Ralf Ludwig, Dietmar Paschek", + "journal": "Physical Chemistry Chemical Physics", + "pubyear": 2022, + "linkpub": "https://doi.org/10.1039/D2CP01209J", + "linkdata": [ + { + "name": "RosDok", + "url": "https://doi.org/10.18453/rosdok_id00003537" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, includes data from molecular dynamics simulations and was published in RosDok. The dataset also includes documentation on PDF format. The RosDok DOI is listed in the references of the corresponding publication.", + "subdiscipline": ["physical chemistry"], + "tags": ["physical chemistry"] + }, + { + "title": "Linderazulen aus einer invasiven Pflanze - Delphi und sein violettes Wunder", + "authors": "Nils Keltsch, Viola Munzert, Klaus-Peter Zeller, Hans-Ullrich Siehl, Stefan Berger, Dieter Sicker", + "journal": "Chemie in unserer Zeit", + "pubyear": 2019, + "linkpub": "https://doi.org/10.1002/ciuz.201900868", + "linkdata": [ + { + "name": "RADAR4Chem", + "url": "https://doi.org/10.22000/786" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/LMVGRKPOXLBIFQ-UHFFFAOYSA-N.1" + }, + { + "name": "nmrXiv", + "url": "https://doi.org/10.57992/nmrxiv.p2" + } + ], + "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", + "description": "The dataset, prepared for publication under the NFDI4Chem stewardship and published in RADAR4Chem contains NMR, MS, UV-VIS and IR data. NMR data are provided in vendor format, as JCAMP-DX (MNova) and NMRium format including NMReDATA (SDfile). MS data are available in vendor formats and open format mzML. IR and UV-VIS data are accessible in tabular files and in JCAMP-DX format. The structure information on Linderazulene and Charmazulene and further supplementary information are provided as tables and SDfiles. The corresponding article does not contain a reference to the dataset, as published some years before the dataset was published.", + "subdiscipline": ["organic chemistry", "analytical chemistry"], + "tags": ["natural products", "NMR spectroscopy"] + }, + { + "title": "Die Polei-Minze im Wandel der Zeiten", + "authors": "Agneta Prasse, Viola Munzert, Elena José, Klaus-Peter Zeller, Hans-Ullrich Siehl, Stefan Berger, Dieter Sicker", + "journal": "Chemie in unserer Zeit", + "pubyear": 2019, + "linkpub": "https://doi.org/10.1002/ciuz.201800860", + "linkdata": [ + { + "name": "RADAR4Chem", + "url": "https://doi.org/10.22000/785" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/NZGWDASTMWDZIW-MRVPVSSYSA-N.1" + }, + { + "name": "nmrXiv", + "url": "https://doi.org/10.57992/nmrxiv.p16" + } + ], + "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", + "description": "The dataset, prepared for publication under NFDI4Chem stewardship and published in RADAR4Chem, contains NMR, MS and UV-VIS data in the instrument manufacturers formats as well as in open formats such as JCAMP-DX for NMR and UV-VIS data and mzML for MS data. Analytical data of CD spectroscopy and MS spectrometry were exported as tabular files and are also provided as CSV files. The structure information on (R)-+-Pulegon and supplementary information are provided as tabular files and as as SDfiles. The corresponding article does not contain a reference to the dataset, as published some years before the dataset was published.", + "subdiscipline": ["organic chemistry", "analytical chemistry"], + "tags": ["natural products", "NMR spectroscopy"] + }, + { + "title": "Karminsäure - Das Rot aus Cochenilleläusen", + "authors": "Franziska Schulze, Juliane Titus, Peter Mettke, Stefan Berger, Hans-Ullrich Siehl, Klaus-Peter Zeller, Dieter Sicker", + "journal": "Chemie in unserer Zeit", + "pubyear": 2013, + "linkpub": "https://doi.org/10.1002/ciuz.201300634", + "linkdata": [ + { + "name": "RADAR4Chem", + "url": "https://doi.org/10.22000/795" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/DGQLVPJVXFOQEV-JNVSTXMASA-N.1" + }, + { + "name": "nmrXiv", + "url": "https://doi.org/10.57992/nmrxiv.p17" + } + ], + "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", + "description": "The dataset, prepared for publication under the NFDI4Chem stewardship and published in RADAR4Chem contains NMR, MS, UV-VIS and CD data. NMR data was previously published in NMRShiftDB2 and are provided in vendor format together with NMReDATA (SDfile). MS data were converted in several different formats including mzML. UV-VIS data are available as tabular files and in JCAMP-DX format. The structure information on carminic acid and further supplementary information are provided in tabular files and as SDfile. The corresponding article does not contain a reference to the dataset, as published some years before the dataset was published.", + "subdiscipline": ["organic chemistry", "analytical chemistry"], + "tags": ["natural products", "NMR spectroscopy"] + }, + { + "title": "Resolving the different bulk moduli within individual soft nanogels using small-angle neutron scattering", + "authors": "Judith Elizabeth Houston, Lisa Fruhner, Alexis de la Cotte, Javier Rojo González, Alexander Valerievich Petrunin, Urs Gasser, Ralf Schweins, Jürgen Allgaier, Walter Richtering, Alberto Fernandez-Nieves, Andrea Scotti", + "journal": "Science Advances", + "pubyear": 2022, + "linkpub": "https://doi.org/10.1126/sciadv.abn6129", + "linkdata": [ + { + "name": "RADAR4Chem", + "url": "https://doi.org/10.22000/604" + }, + { + "name": "ILL Data Portal", + "url": "http://doi.org/10.5291/ILL-DATA.9-11-2067" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset in RADAR4Chem, curated by the publishing authors, includes SANS data as tab separated text files. The corresponding article references the dataset in RADAR4Chem in the data and materials availability statement via its URL. Moreover, the article references a dataset in Institut Laue-Langevin (ILL) data portal repository via its DOI.", + "subdiscipline": ["physical chemistry"], + "tags": ["nanogels"] + }, + { + "title": "Manipulating electron transfer – the influence of substituents on novel copper guanidine quinolinyl complexes", + "authors": "Joshua Heck, Fabian Metz, Sören Buchenau, Melissa Teubner, Benjamin Grimm-Lebsanft, Thomas P. Spaniol, Alexander Hoffmann, Michael A. Rübhausen, Sonja Herres-Pawlis", + "journal": "Chemical Science", + "pubyear": 2022, + "linkpub": "https://doi.org/10.1039/D2SC02910C", + "linkdata": [ + { + "name": "RADAR4Chem", + "url": "https://doi.org/10.22000/613" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JHIAOWGCGN-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-XNDIRRNFWB-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-YLBKXSDEWV-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-MTPUXEIATO-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DYIBODSCVM-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-YSUUDYJLPD-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-BRNGTXITIQ-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-ACOFZHHYLN-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-QLLLYNCAUW-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-YKNRUBPOGQ-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-ZJSFNHZUYT-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-HXVOLPKNEJ-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-FYZDDQVKLM-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-AOATVJLAFL-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-XTTRESRELV-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-MCYXBNUZMI-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-NNDILYOKJA-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DMWOEMCLSH-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JZHZQROLCJ-UHFFFADPSC-NUHFF-MUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-FNFSJYCLRP-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-UMMQIWZYOP-UHFFFADPSC-NUHFF-LUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-GCLZBRQZKM-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-XYXSWFSTLI-UHFFFADPSC-NUHFF-LUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JBXRXORXEO-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-GQFHEVHUGU-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-UMXPYYQOWK-UHFFFADPSC-NUHFF-LUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JQDGMCVIMF-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DRQHCTISPL-UHFFFADPSC-NUHFF-LUHFF-NUHFF-ZZZ" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, includes reactions and sample data with its ATR-FTIP, HR-ESI-TOF-MS and 1H/13C NMR data published in Chemotion Repository. Data of DFT calculations is available in RADAR4Chem and referenced in the data availability statement of the corresponding publication. The supplementary information PDF, which reference datasets in Chemotion Repository via their DOI, and crystal structure data are available from the web page of the publisher. Please note that there were no Collection DOIs at the time of publication. Therefore, many dataset DOIs are reported.", + "subdiscipline": ["inorganic chemistry"], + "tags": ["copper complexes"] + }, + { + "title": "In-situ study of the impact of temperature and architecture on the interfacial structure of microgels", + "authors": "Steffen Bochenek, Fabrizio Camerin, Emanuela Zaccarelli, Armando Maestro, Maximilian M. Schmidt, Walter Richtering, Andrea Scotti", + "journal": "Nature Communications", + "pubyear": 2022, + "linkpub": "https://doi.org/10.1038/s41467-022-31209-3", + "linkdata": [ + { + "name": "RADAR4Chem", + "url": "https://doi.org/10.22000/603" + }, + { + "name": "ILL Data Portal", + "url": "https://doi.org/10.5291/ILL-DATA.EASY-462" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The datasets, curated by the publishing authors, includes raw, associated, and derived data of NR, DLS, AFM and SANS supporting the reported results. RADAR DOI as well as ePIC for archived dataset, identical to published dataset, are given in the data availability statement. The RADAR DOI is also listed listed in the references of the corresponding publication. The NR raw data used in the study are available in the ILL Data Portal repository.", + "subdiscipline": ["physical chemistry"], + "tags": ["macromolecules"] + }, + { + "title": "A risk based assessment approach for chemical mixtures from wastewater treatment plant effluents", + "authors": "Saskia Finckh, Liza-Marie Beckers, Wibke Busch, Eric Carmona, Valeria Dulio, Lena Kramer, Martin Krauss, Leo Posthuma, Tobias Schulze, Jaap Slootweg, Peter C. von der Ohe, Werner Brack", + "journal": "Environment International", + "pubyear": 2022, + "linkpub": "https://doi.org/10.1016/j.envint.2022.107234", + "linkdata": [ + { + "name": "Pangaea", + "url": "https://doi.pangaea.de/10.1594/PANGAEA.940755" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, includes results data, raw MS files, and processing data (MZmine, MZquant, Tracefinder) in Pangaea – a repository for geospatial data and environmental chemistry. Supplementary material of the corresponding publication includes a word document and a excel document.", + "subdiscipline": [ + "organic chemistry", + "analytical chemistry", + "environmental chemistry" + ], + "tags": ["mass spectrometry"] + }, + { + "title": "Improving the screening analysis of pesticide metabolites in human biomonitoring by combining high-throughput in vitro incubation and automated LC−HRMS data processing", + "authors": "Carolin Huber, Erik Müller, Tobias Schulze, Werner Brack, and Martin Krauss", + "journal": "Analytical Chemistry", + "pubyear": 2021, + "linkpub": "https://doi.org/10.1021/acs.analchem.1c00972", + "linkdata": [ + { + "name": "MetaboLights", + "url": "https://www.ebi.ac.uk/metabolights/MTBLS2402/descriptors" + }, + { + "name": "MassBank EU", + "url": "https://github.com/MassBank/MassBank-data/commit/691fe2429e33c883e56d5234277a6586a128cc5c" + }, + { + "name": "GitHub", + "url": "https://github.com/chufz/incubatoR" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, contain MS data and were published in MetaboLight, Massbank and MassBank-data/GitHub. All raw mass spectra were converted to the open format mzML format. The used code is available at GitHub and were referenced in the corresponding article.", + "subdiscipline": [ + "organic chemistry", + "analytical chemistry", + "metabolomics", + "epidemiology" + ], + "tags": ["mass spectrometry"] + }, + { + "title": "Desymmetrization strategy to achieve triptycene-based 3,6-dimethoxytriphenylenes via oxidative cyclodehydrogenation", + "authors": "Dennis Reinhard, Frank Rominger, Michael Mastalerz", + "journal": "European Journal of Organic Chemistry", + "pubyear": 2020, + "linkpub": "https://doi.org/10.1002/ejoc.202001073", + "linkdata": [ + { + "name": "heiDATA", + "url": "https://doi.org/10.11588/data/OH6757" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc25v89m" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The datasets, curated by the publishing authors, published in heiData, contains data of NMR, MS, IR in the instrument manufacturers formats.The IR data is also available in TSV format. Elemental analysis data is provided as JPG. Crystallographic data as CIF are available from CSD. References to a dataset in CSD is given in the supporting information PDF of the corresponding scientific publication.", + "subdiscipline": ["organic chemistry"], + "tags": ["Triptycene"] + }, + { + "title": "A dataset of 255,000 randomly selected and manually classified extracted ion chromatograms for evaluation of peak detection methods ", + "authors": "Erik Müller, Carolin Huber, Liza-Marie Beckers, Werner Brack, Martin Krauss, Tobias Schulze", + "journal": "Metabolites", + "pubyear": 2020, + "linkpub": "https://doi.org/10.3390/metabo10040162", + "linkdata": [ + { + "name": "Zenodo", + "url": "https://doi.org/10.5281/zenodo.3756211" + }, + { + "name": "MetaboLights", + "url": "https://www.ebi.ac.uk/metabolights/editor/MTBLS1455" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, contains 255.000 extracted ion chromatograms (EICs or XICs) of 5000 peaks randomly sampled from across 51 environmental water samples for the evaluation on peak detection and gap filling algorithms. The scientific publication references the dataset in Zenodo in its data availability statement.", + "subdiscipline": [ + "organic chemistry", + "analytical chemistry", + "cheminformatics" + ], + "tags": ["mass spectrometry"] + }, + { + "title": "Systematic evaluation of the biological variance within the Raman based colorectal tissue diagnostics", + "authors": "Nadine Vogler, Thomas Bocklitz, Firas Subhi Salah, Carsten Schmidt, Rolf Brauer, Tiantian Cui, Masoud Mireskandari, Florian R. Greten, Michael Schmitt, Andreas Stallmach, Iver Petersen, Jürgen Popp", + "journal": "Journal of Biophotonics", + "pubyear": 2015, + "linkpub": "https://doi.org/10.1002/jbio.201500237", + "linkdata": [ + { + "name": "Zenodo", + "url": "https://zenodo.org/record/3905058" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, prepared for publication by the publishing authors, contains MS data and RAMAN spectral data in CSV format. Moreover, CSVs with information on samples, gene activity, tissue type and more ara available. The corresponding scientific publication does not reference the dataset in Zenodo via its DOI.", + "subdiscipline": [ + "medicinal chemistry", + "chemometric", + "physical chemistry" + ], + "tags": ["raman spectroscopy", "biomedical diagnostics"] + }, + { + "title": "Comparability of Raman spectroscopic configurations: A large scale cross-laboratory study", + "authors": "Shuxia Guo, Claudia Beleites, Ute Neugebauer, Sara Abalde-Cela, Nils Kristian Afseth, Fatima Alsamad, Suresh Anand, Cuauhtemoc Araujo-Andrade, Sonja Aškrabić, Ertug Avci, Monica Baia, Malgorzata Baranska, Enrico Baria, Luis A. E. Batista de Carvalho, Philippe de Bettignies, Alois Bonifacio, Franck Bonnier, Eva Maria Brauchle, Hugh J. Byrne, Igor Chourpa, Riccardo Cicchi, Frederic Cuisinier, Mustafa Culha, Marcel Dahms, Catalina David, Ludovic Duponchel, Shiyamala Duraipandian, Samir F. El-Mashtoly, David I. Ellis, Gauthier Eppe, Guillaume Falgayrac, Ozren Gamulin, Benjamin Gardner, Peter Gardner, Klaus Gerwert, Evangelos J. Giamarellos-Bourboulis, Sveinbjorn Gizurarson, Marcin Gnyba, Royston Goodacre, Patrick Grysan, Orlando Guntinas-Lichius, Helga Helgadottir, Vlasta Mohaček Grošev, Catherine Kendall, Roman Kiselev, Micha Kölbach, Christoph Krafft, Sivashankar Krishnamoorthy, Patrick Kubryck, Bernhard Lendl, Pablo Loza-Alvarez, Fiona M. Lyng, Susanne Machill, Cedric Malherbe, Monica Marro, Maria Paula M. Marques, Ewelina Matuszyk, Carlo Francesco Morasso, Myriam Moreau, Howbeer Muhamadali, Valentina Mussi, Ioan Notingher, Marta Z. Pacia, Francesco S. Pavone, Guillaume Penel, Dennis Petersen, Olivier Piot, Julietta V. Rau, Marc Richter, Maria Krystyna Rybarczyk, Hamideh Salehi, Katja Schenke-Layland, Sebastian Schlücker, Markus Schosserer, Karin Schütze, Valter Sergo, Faris Sinjab, Janusz Smulko, Ganesh D. Sockalingum, Clara Stiebing, Nick Stone, Valérie Untereiner, Renzo Vanna, Karin Wieland, Jürgen Popp, and Thomas Bocklitz*", + "journal": "Analytical Chemistry", + "pubyear": 2020, + "linkpub": "https://doi.org/10.1021/acs.analchem.0c02696", + "linkdata": [ + { + "name": "Zenodo", + "url": "https://zenodo.org/record/4152953" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, prepared for publication by the publishing authors, contains slightly processed raw data split in wavenumber axis files (wy_XYZ), spectral intensity files (spec_XYZ) and metadata files (meta_XYZ) – all in CSV format. The corresponding scientific publication references the dataset in Zenodo via its DOI.", + "subdiscipline": ["analytical chemistry"], + "tags": ["raman spectroscopy"] + }, + { + "title": "A triptycene-based enantiopure bis(diazadibenzoanthracene) by a chirality-assisted synthesis approach", + "authors": "Xubin Wang, Bernd Kohl, Frank Rominger, Sven M. Elbert, Prof. Michael Mastalerz", + "journal": "Chemistry – A European Journal", + "pubyear": 2020, + "linkpub": "https://doi.org/10.1002/chem.202002781", + "linkdata": [ + { + "name": "heiDATA", + "url": "https://doi.org/10.11588/data/46LINE" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc25b961" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc25b972" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The datasets, curated by the publishing authors, contain NMR, MS and IR data in the instrument manufacturers formats. The IR data is also availabe as data point table (DPT) files. Data of elemental analysis was added to the dataset as scans of analysis reports. Crystallographic data as CIF files are available from CSD. References to datasets in CSD are given in the supporting information PDF of the corresponding article, while the dataset in heiDATA is not referenced in the scientific publication or supporting information.", + "subdiscipline": ["organic chemistry"], + "tags": ["N-heteropolycyclenes"] + }, + { + "title": "Bicyclo[1.1.1]pentyl sulfoximines: synthesis and functionalizations", + "authors": "Robin M. Bär, Lukas Langer, Martin Nieger, Stefan Bräse", + "journal": "Advanced Synthesis & Catalysis", + "pubyear": 2020, + "linkpub": "https://doi.org/10.1002/adsc.201901453", + "linkdata": [ + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23hkz5" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23hl07" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23hl18" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23hl29" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23hl3b" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23hl4c" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23hl5d" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23hl6f" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The datasets, curated by the publishing authors, contains NMR data in the instrument manufacturers formats and is also provided by Chemotion Repository in the open format JCAMP-DX. Crystallographic data as CIF are available from CSD. References to datasets in CSD are given in the supporting information PDF of the corresponding article via CSD numbers.", + "subdiscipline": ["organic chemistry", "analytical chemistry"], + "tags": ["organic synthesis", "heterocycles"] + }, + { + "title": "Exploring the role of solvent on carbohydrate−aryl interactions by diffusion NMR-based studies", + "authors": "Linda Jütten, Karla Ramírez-Gualito, Andreas Weilhard, Benjamin albrecht, Gabriel Cuevas, María del Carmen Fernández-Alonso, Jesús Jiménez-Barbero, Nils E. Schlörer, Dolores Diaz", + "journal": "ACS Omega", + "pubyear": 2018, + "linkpub": "https://doi.org/10.1021/acsomega.7b01630", + "linkdata": [ + { + "name": "NMRShiftDB2", + "url": "http://www.nmrshiftdb.org/molecule/60004029" + }, + { + "name": "NMRShiftDB2", + "url": "http://www.nmrshiftdb.org/molecule/60004074" + }, + { + "name": "NMRShiftDB2", + "url": "http://www.nmrshiftdb.org/molecule/60004071" + }, + { + "name": "NMRShiftDB2", + "url": "http://www.nmrshiftdb.org/molecule/60004072" + }, + { + "name": "NMRShiftDB2", + "url": "http://www.nmrshiftdb.org/molecule/60004073" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The NMR datasets, curated by the publishing authors, was published in NMRShiftDB2. References to the dataset is given via DOI in the supporting information PDF.", + "subdiscipline": ["analytical chemistry"], + "tags": ["Carbohydrates", "NMR spectroscopy"] + }, + { + "title": "A new generation of terminal copper nitrenes and their application in aromatic C–H amination reactions", + "authors": "Fabian Thomas, Matthias Oster, Florian Schön, Kai C. Göbgen, Benedikt Amarouch, Dominik Steden, Alexander Hoffmann, Sonja Herres-Pawlis", + "journal": "Dalton Transactions", + "pubyear": 2021, + "linkpub": "https://doi.org/10.1039/D1DT00832C", + "linkdata": [ + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/UFNYJPFRGDSKSE-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/LSGGPBYVWWQPOY-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/AXGNYRCNCNZKKZ-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/ZXFVPDKZHCLOHM-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/MHRJPVSEKXPPCE-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/FONYBVKTMVEXPM-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/BJUATVHTJTTWSW-UHFFFAOYSA-H.1" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23w7mw" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23w7nx" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23w7py" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23w7qz" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23w7r0" + }, + { + "name": "ioChemDB", + "url": "https://doi.org/10.19061/iochem-bd-6-84" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The datasets, curated by the publishing authors, contain NMR data in the instrument manufacturers formats and is also provided by Chemotion Repository in the open format JCAMP-DX. Crystallographic data as CIF files are available from CSD and computational data was deposited in ioChem-DB. References to the crystallographic data is given in the section on supporting information in the corresponding publication. References on NMR data can be retrieved from the supplementary information PDF. Please note that there were no Collection DOIs at the time of publication. Therefore, many dataset DOIs are reported.", + "subdiscipline": ["inorganic chemistry"], + "tags": ["inorganic synthesis"] + }, + { + "title": "Exceptional substrate diversity in oxygenation reactions catalyzed by a bis(µ-oxo) copper complex", + "authors": "Melanie Paul, Melissa Teubner, Benjamin Grimm-Lebsanft, Christiane Golchert, Yannick Meiners, Laura Senft, Kristina Keisers, Patricia Liebhäuser, Thomas Rösener, Florian Biebl, Sören Buchenau, Maria Naumova, Vadim Murzin, Roxanne Krug, Alexander Hoffmann, Jörg Pietruszka, Ivana Ivanovic-Burmazovic, Michael Rübhausen, Sonja Herres-Pawlis ", + "journal": "Chemistry – A European Journal", + "pubyear": 2020, + "linkpub": "https://doi.org/10.1002/chem.202000664", + "linkdata": [ + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/FCAMUPIRWKNASD-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/XQWHZHODENELCJ-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/WYPRQDLUGJFJCG-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/SXYROFUQPFOADI-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/NLACLAPNGFWSTA-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/WOMQOOHUINDJRV-UHFFFAOYSA-M.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/WOMQOOHUINDJRV-UHFFFAOYSA-M.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/SQELSYLGCLCOLU-UHFFFAOYSA-M.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/SEXRCKWGFSXUOO-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/JJGCDLVZJZGHBZ-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/ODJOHIWKLOPSFF-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/AEFJLSGXOWZNJZ-UHFFFAOYSA-N.1" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/BMNLXKVRGRRHKW-UHFFFAOYSA-N.1" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23gtbr" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23gtcs" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23gtdt" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23gtfv" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc23wtb5" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The datasets, curated by the publishing authors, contain NMR data in the instrument manufacturers formats and is also provided by Chemotion Repository in the open format JCAMP-DX. Crystallographic data as .cif files are available from CSD. References to datasets in Chemotion Repository are given in the supporting information PDF of the corresponding article via DOIs, while datasets in CSD were referenced with their CCDC accession number. Please note that there were no Collection DOIs at the time of publication. Therefore, many dataset DOIs are reported.", + "subdiscipline": ["inorganic chemistry"], + "tags": ["copper complexes"] + }, + { + "title": "Synthesis and biological evaluation of highly potent fungicidal deoxy-hygrophorones", + "authors": "Toni Ditfe, Eileen Bette, Haider N. Sultani, Alexander Otto, Ludger A. Wessjohann, Norbert Arnold, Bernhard Westermann", + "journal": "European Journal of Organic Chemistry", + "pubyear": 2021, + "linkpub": "https://doi.org/10.1002/ejoc.202100729", + "linkdata": [ + { + "name": "RADAR", + "url": "https://doi.org/10.22000/451" + }, + { + "name": "nmrXiv", + "url": "https://doi.org/10.57992/nmrxiv.p57" + } + ], + "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", + "description": "The dataset, prepared for publication under NFDI4Chem stewardship and published in RADAR, contains NMR and MS data in the instrument manufacturers formats as well as in open formats such as JCAMP-DX, NMReDATA (Mnova 14.1.1) for NMR data and mzML for MS data. Results from the bioassay are available as tabular files and as CSV. Additionally, all structures are provided as CTfiles and are listed, corresponding to their numbering in the publication, in a CSV also including IPB 3LC lab journal entries, SMILES structure codes and InChI and InChIKey identifiers. The corresponding scientific article references the dataset in the section on supporting information.", + "subdiscipline": ["organic chemistry", "natural products chemistry"], + "tags": ["natural products"] + }, + { + "title": "5α-Cyprinol sulfate: complete NMR assignment and revision of earlier published data, including the submission of a computer-readable assignment in NMReDATA format", + "authors": "Meike Hahn, Eric von Elert, Laurent Bigler, M. Dolores Díaz Hernández, Nils E. Schloerer", + "journal": "Magnetic Resonance in Chemistry", + "pubyear": 2018, + "linkpub": "https://doi.org/10.1002/mrc.4782", + "linkdata": [ + { + "name": "NMRShiftDB2", + "url": "https://doi.org/10.18716/nmrshiftdb2/60004113/nmredata_mrc_cd3od" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, is published in NMRShiftDB2 and also available from the publisher as supporting material. References to the dataset is given via DOI in the supporting information MS word document.", + "subdiscipline": ["organic chemistry", "natural products chemistry"], + "tags": ["natural products", "NMR spectroscopy"] + }, + { + "title": "Modular Synthesis of New Pyrroloquinoline Quinone Derivatives", + "authors": "Rachel Janßen, Violeta A. Vetsova, Dominik Putz, Peter Mayer, Lena J. Daumann", + "journal": "Synthesis", + "pubyear": 2023, + "linkpub": "https://doi.org/10.1055/s-0041-1738426", + "linkdata": [ + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/collection/RAJ_2022-08-25" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, was awarded with the FAIR4Chem Award 2023.", + "subdiscipline": ["organic chemistry"], + "tags": ["organic synthesis"] + }, + { + "title": "Predictive design of ordered mesoporous silica with well-defined, ultra-large mesopores", + "authors": "Charlotte Vogler, Stefan Naumann, Johanna R. Bruckner", + "journal": "Molecular Systems Design & Engineering", + "pubyear": 2022, + "linkpub": "https://doi.org/10.1039/D2ME00107A", + "linkdata": [ + { + "name": "DaRus", + "url": "https://doi.org/10.18419/darus-2374" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The dataset, curated by the publishing authors, was awarded with the FAIR4Chem Award 2023.", + "subdiscipline": [ + "physical chemistry", + "polymer chemistry", + "material science" + ], + "tags": ["mesoporous silica"] + }, + { + "title": "Modular Synthesis of trans-A2B2-Porphyrins with Terminal Esters: Systematically Extending the Scope of Linear Linkers for Porphyrin-Based MOFs", + "authors": "Stefan M. Marschner, Ritesh Haldar, Olaf Fuhr, Christof Wöll, Stefan Bräse", + "journal": "Chemistry – A European Journal", + "pubyear": 2020, + "linkpub": "https://doi.org/10.1002/chem.202003885", + "linkdata": [ + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-PBTPREHATA-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ.4" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-BHYVHYPBRY-UHFFFADPSC-NUHFF-NUHFF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-QKHPYPUCYC-UHFFFADPSC-NUHFF-NHYOA-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DJGWMTKKMO-UHFFFADPSC-NUHFF-NNYHH-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-CQICNQVIXS-UHFFFADPSC-NUHFF-NKDHF-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-UYKMRQXETK-UHFFFADPSC-NUHFF-NWLSV-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DVNRJSFZLK-UHFFFADPSC-NUHFF-NWLSV-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-LVGOHACWPD-UHFFFADPSC-NUHFF-NUVBP-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-JQQMHNZHWI-UHFFFADPSC-NUHFF-NNSBK-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-DJCDFXZBRU-UHFFFADPSC-NUHFF-NOCLW-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-LLIFZWKYAN-UHFFFADPSC-NUHFF-NHDGP-NUHFF-ZZZ" + }, + { + "name": "Chemotion Repository", + "url": "https://doi.org/10.14272/reaction/SA-FUHFF-UHFFFADPSC-LHQKMJBXIU-UHFFFADPSC-NUHFF-NLTSL-NUHFF-ZZZ" + }, + { + "name": "CSD/CCDC", + "url": "https://doi.org/10.5517/ccdc.csd.cc216k3y" + } + ], + "linkcomment": "curated by the publishing authors", + "description": "The datasets, curated by the publishing authors, were published in CSD and Chemotion Repository. Please note, that Collection DOIs did not exist at the time of publication. Hence, many dataset DOIs are reported.", + "subdiscipline": ["organic chemistry"], + "tags": ["porphyrins"] + }, + { + "title": "Antimicrobial Prenylated Isoflavones from the Leaves of the Amazonian Medicinal Plant Vatairea guianensis Aubl.", + "authors": "Serhat S. Çiçek, Mayra Galarza Pérez, Arlette Wenzel-Storjohann, Roberto M. Bezerra, Jorge F. O. Segovia, Ulrich Girreser, Isamu Kanzaki, and Deniz Tasdemir", + "journal": "Journal of Natural Products", + "pubyear": 2022, + "linkpub": "https://doi.org/10.1021/acs.jnatprod.1c01035", + "linkdata": [ + { + "name": "RADAR4Chem", + "url": "https://doi.org/10.22000/1865" + }, + { + "name": "nmrXiv", + "url": "https://doi.org/10.57992/nmrxiv.p55" + } + ], + "linkcomment": "curated by Tillmann G. Fischer (IPB/NFDI4Chem)", + "description": "The dataset, prepared for publication under NFDI4Chem stewardship and published in RADAR4Chem as well as nmrXiv, includes NMR, IR and MS data in the instrument manufacturers' formats as well as in open formats such as JCAMP-DX (TopSpin 4.3) for NMR data and mzML for MS data. UV-VIS spectra are only available as PDF format, due to challenges with data export, and all chemical structures are provided as Molfiles and listed in a CSV according to their numbering in the publication, including local sample identifiers, SMILES structure codes, and InChI and InChIKey identifiers. A markdown README and a rendered HTML version provide an entry point for human readers. The corresponding scientific article does not reference the dataset as it was published one year before the dataset was published.", + "subdiscipline": ["organic chemistry"] + } +] diff --git a/static/img/topics/Graphical_Abstract_Ontologies4Chem_2021.jpg b/static/img/topics/Graphical_Abstract_Ontologies4Chem_2021.jpg new file mode 100644 index 00000000..5b209558 Binary files /dev/null and b/static/img/topics/Graphical_Abstract_Ontologies4Chem_2021.jpg differ