Docs @ 9b1e64f

Author: MFC Action

documentation/authors.html

@@ -64,7 +64,7 @@
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">MFC
    </div>
-   <div id="projectbrief">High-fidelity multiphase flow simulation</div>
+   <div id="projectbrief">Exascale flow solver</div>
   </td>
  </tr>
  </tbody>
@@ -144,10 +144,5 @@
 </div><!-- container -->
 <!-- HTML footer for doxygen 1.9.1-->
 <!-- start footer part -->
-<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
-  <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.16.1 </li>
-  </ul>
-</div>
 </body>
 </html>

documentation/case.html

@@ -64,7 +64,7 @@
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">MFC
    </div>
-   <div id="projectbrief">High-fidelity multiphase flow simulation</div>
+   <div id="projectbrief">Exascale flow solver</div>
   </td>
  </tr>
  </tbody>
@@ -179,7 +179,7 @@ <h2 class="doxsection"><a class="anchor" id="autotoc_md5"></a>
 </ul>
 <p><b>Parameter Lookup:</b></p><ul>
 <li>CLI search: <span class="tt">./mfc.sh params &lt;query&gt;</span> - Search ~3,300 parameters from the command line</li>
-<li>Full reference: <b><a class="el" href="parameters.html" title="Case Parameters Reference">Case Parameters</a></b> - Complete parameter documentation</li>
+<li>Full reference: <b><a class="el" href="parameters.html" title="Case Parameters">Case Parameters</a></b> - Complete parameter documentation</li>
 </ul>
 <p>There are multiple sets of parameters that must be specified in the python input file:</p><ol type="1">
 <li><a class="el" href="#sec-runtime" title="1. Runtime">Runtime Parameters</a></li>
@@ -1448,10 +1448,5 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md23"></a>
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 <!-- HTML footer for doxygen 1.9.1-->
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-<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
-  <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.16.1 </li>
-  </ul>
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 </body>
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documentation/case_constraints.html

@@ -64,7 +64,7 @@
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">MFC
    </div>
-   <div id="projectbrief">High-fidelity multiphase flow simulation</div>
+   <div id="projectbrief">Exascale flow solver</div>
   </td>
  </tr>
  </tbody>
@@ -1405,10 +1405,5 @@ <h2 class="doxsection"><a class="anchor" id="physics-warnings"></a>
 </div><!-- container -->
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-  </ul>
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 </body>
 </html>

documentation/citelist.html

@@ -64,7 +64,7 @@
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">MFC
    </div>
-   <div id="projectbrief">High-fidelity multiphase flow simulation</div>
+   <div id="projectbrief">Exascale flow solver</div>
   </td>
  </tr>
  </tbody>
@@ -356,10 +356,5 @@
 </div><!-- container -->
 <!-- HTML footer for doxygen 1.9.1-->
 <!-- start footer part -->
-<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
-  <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.16.1 </li>
-  </ul>
-</div>
 </body>
 </html>

documentation/cli-reference.html

@@ -14,7 +14,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.16.1"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>MFC: Command Line Reference</title>
+<title>MFC: CLI Reference</title>
 <meta name=”keywords” content="exascale, fluid dynamics, cfd, computational fluid dynamics, compressible, hpc, bryngelson, colonius, subgrid, multiphase, frontier, summit, el capitan, aurora, amd gpu, gpu, nvidia"/>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
@@ -64,7 +64,7 @@
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">MFC
    </div>
-   <div id="projectbrief">High-fidelity multiphase flow simulation</div>
+   <div id="projectbrief">Exascale flow solver</div>
   </td>
  </tr>
  </tbody>
@@ -125,11 +125,11 @@
 </div>
 
 <div><div class="header">
-  <div class="headertitle"><div class="title">Command Line Reference </div></div>
+  <div class="headertitle"><div class="title">CLI Reference </div></div>
 </div><!--header-->
 <div class="contents">
 <div class="textblock"><h1 class="doxsection"><a class="anchor" id="autotoc_md29"></a>
-Command Line Reference</h1>
+CLI Reference</h1>
 <blockquote class="doxtable">
 <p><b>Auto-generated</b> from <span class="tt">toolchain/mfc/cli/commands.py</span></p>
 <p>Regenerate with: <span class="tt">./mfc.sh generate</span> </p>
@@ -847,10 +847,5 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md64"></a>
 </div><!-- container -->
 <!-- HTML footer for doxygen 1.9.1-->
 <!-- start footer part -->
-<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
-  <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.16.1 </li>
-  </ul>
-</div>
 </body>
 </html>

documentation/contributing.html

@@ -64,7 +64,7 @@
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">MFC
    </div>
-   <div id="projectbrief">High-fidelity multiphase flow simulation</div>
+   <div id="projectbrief">Exascale flow solver</div>
   </td>
  </tr>
  </tbody>
@@ -200,7 +200,7 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md71"></a>
 <li><b>Fypp</b> preprocesses <span class="tt">.fpp</span> files into <span class="tt">.f90</span> (expands GPU macros, code generation)</li>
 <li><b>Fortran compiler</b> builds three executables from the generated <span class="tt">.f90</span> files</li>
 </ol>
-<p>See <a class="el" href="parameters.html" title="Case Parameters Reference">Case Parameters Reference</a> for the full list of ~3,400 simulation parameters. See <a class="el" href="case_constraints.html" title="Case Creator Guide">Case Creator Guide</a> for feature compatibility and example configurations.</p>
+<p>See <a class="el" href="parameters.html" title="Case Parameters">Case Parameters</a> for the full list of ~3,400 simulation parameters. See <a class="el" href="case_constraints.html" title="Case Creator Guide">Case Creator Guide</a> for feature compatibility and example configurations.</p>
 <h2 class="doxsection"><a class="anchor" id="autotoc_md72"></a>
 Development Workflow</h2>
 <table class="markdownTable">
@@ -352,7 +352,7 @@ <h2 class="doxsection"><a class="anchor" id="autotoc_md87"></a>
 <p>Step-by-step recipes for common development tasks.</p>
 <h3 class="doxsection"><a class="anchor" id="autotoc_md88"></a>
 How to Add a New Simulation Parameter</h3>
-<p>Adding a parameter touches both the Python toolchain and Fortran source. Follow these steps in order. See <a class="el" href="parameters.html" title="Case Parameters Reference">Case Parameters Reference</a> for the full list of existing parameters and <a class="el" href="case_constraints.html" title="Case Creator Guide">Case Creator Guide</a> for feature compatibility.</p>
+<p>Adding a parameter touches both the Python toolchain and Fortran source. Follow these steps in order. See <a class="el" href="parameters.html" title="Case Parameters">Case Parameters</a> for the full list of existing parameters and <a class="el" href="case_constraints.html" title="Case Creator Guide">Case Creator Guide</a> for feature compatibility.</p>
 <p><b>Step 1: Register in Python</b> (<span class="tt">toolchain/mfc/params/definitions.py</span>)</p>
 <p>Add a call to <span class="tt">_r()</span> inside the <span class="tt">_load()</span> function:</p>
 <div class="fragment"><div class="line">_r(<span class="stringliteral">&quot;my_param&quot;</span>, REAL, {<span class="stringliteral">&quot;my_feature_tag&quot;</span>},</div>
@@ -363,7 +363,7 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md88"></a>
 <li><b>type</b>: <span class="tt">INT</span>, <span class="tt">REAL</span>, <span class="tt">LOG</span>, <span class="tt">STR</span>, or <span class="tt">A_REAL</span> (analytic expression)</li>
 <li><b>tags</b>: set of feature tags for grouping (e.g. <span class="tt">{"bubbles"}</span>, <span class="tt">{"mhd"}</span>)</li>
 <li><b>desc</b>: human-readable description (optional; auto-generated from <span class="tt">_SIMPLE_DESCS</span> or <span class="tt">_ATTR_DESCS</span> if omitted)</li>
-<li><b>math</b>: LaTeX math symbol in Doxygen format (optional; shown in the Symbol column of <a class="el" href="parameters.html" title="Case Parameters Reference">Case Parameters Reference</a>)</li>
+<li><b>math</b>: LaTeX math symbol in Doxygen format (optional; shown in the Symbol column of <a class="el" href="parameters.html" title="Case Parameters">Case Parameters</a>)</li>
 </ul>
 <p>For indexed families like <span class="tt">fluid_pp</span>, put the symbol next to its attribute name using tuples:</p>
 <div class="fragment"><div class="line"><span class="keywordflow">for</span> f <span class="keywordflow">in</span> range(1, NF + 1):</div>
@@ -798,10 +798,5 @@ <h2 class="doxsection"><a class="anchor" id="autotoc_md105"></a>
 </div><!-- container -->
 <!-- HTML footer for doxygen 1.9.1-->
 <!-- start footer part -->
-<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
-  <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.16.1 </li>
-  </ul>
-</div>
 </body>
 </html>

documentation/custom.css

@@ -3,6 +3,16 @@
  * Overrides for doxygen-awesome theme
  */
 
+/* Narrower left navigation panel */
+html {
+    --side-nav-fixed-width: 210px;
+}
+
+/* Hide tree sync button */
+#nav-sync {
+    display: none;
+}
+
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  * Doxygen consumes %<word> even inside code spans, so we split around %
  * into adjacent <code> elements and remove internal borders/padding. */

documentation/docker.html

@@ -64,7 +64,7 @@
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">MFC
    </div>
-   <div id="projectbrief">High-fidelity multiphase flow simulation</div>
+   <div id="projectbrief">Exascale flow solver</div>
   </td>
  </tr>
  </tbody>
@@ -263,10 +263,5 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md119"></a>
 </div><!-- container -->
 <!-- HTML footer for doxygen 1.9.1-->
 <!-- start footer part -->
-<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
-  <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.16.1 </li>
-  </ul>
-</div>
 </body>
 </html>

documentation/equations.html

@@ -64,7 +64,7 @@
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">MFC
    </div>
-   <div id="projectbrief">High-fidelity multiphase flow simulation</div>
+   <div id="projectbrief">Exascale flow solver</div>
   </td>
  </tr>
  </tbody>
@@ -132,7 +132,7 @@
 MFC: Comprehensive Equations Reference</h1>
 <p>This document catalogs every equation solved by MFC, organized by physical model. Each section notes the input parameter(s) that activate the corresponding physics module and cross-references the relevant source files.</p>
 <p>The models and algorithms described here are detailed in Wilfong et al. <a class="el" href="citelist.html#CITEREF_wilfong26">[54]</a> (MFC 5.0) and Bryngelson et al. <a class="el" href="citelist.html#CITEREF_bryngelson21">[8]</a>. Foundational references for each model are cited inline; see the <a class="el" href="citelist.html" title="Bibliography">Bibliography</a> for full details.</p>
-<p>For parameter details and allowed values, see <a class="el" href="case.html" title="Case Files">Case Files</a> and the <a class="el" href="parameters.html" title="Case Parameters Reference">Case Parameters</a> reference.</p>
+<p>For parameter details and allowed values, see <a class="el" href="case.html" title="Case Files">Case Files</a> and the <a class="el" href="parameters.html" title="Case Parameters">Case Parameters</a> reference.</p>
 <hr  />
 <h2 class="doxsection"><a class="anchor" id="autotoc_md123"></a>
 1. Overview</h2>
@@ -1143,10 +1143,5 @@ <h2 class="doxsection"><a class="anchor" id="autotoc_md195"></a>
 </div><!-- container -->
 <!-- HTML footer for doxygen 1.9.1-->
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-  </ul>
-</div>
 </body>
 </html>

documentation/examples.html

@@ -64,7 +64,7 @@
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">MFC
    </div>
-   <div id="projectbrief">High-fidelity multiphase flow simulation</div>
+   <div id="projectbrief">Exascale flow solver</div>
   </td>
  </tr>
  </tbody>
@@ -372,10 +372,5 @@ <h3 class="doxsection"><a class="anchor" id="autotoc_md258"></a>
 </div><!-- container -->
 <!-- HTML footer for doxygen 1.9.1-->
 <!-- start footer part -->
-<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.16.1 </li>
-  </ul>
-</div>
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