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Handle URI from FileContentService.getWebDavUrl
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nextflow/src/org/labkey/nextflow/pipeline/NextFlowPipelineJob.java

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -72,7 +72,7 @@ private static Path createConfig(Path configTemplate, Path parentDir, Path jobDi
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webdavUrl = StringUtils.stripEnd(webdavUrl, "/");
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String substitutedContent = template.replace("${quant_spectra_dir}", "quant_spectra_dir = '" + webdavUrl + "'");
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String uploadUrl = FileContentService.get().getWebDavUrl(jobDir, container, FileContentService.PathType.full);
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String uploadUrl = FileContentService.get().getWebDavUrl(jobDir, container, FileContentService.PathType.full).toString();
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uploadUrl = StringUtils.stripEnd(uploadUrl, "/");
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substitutedContent = substitutedContent.replace("${panorama.upload_url}", "panorama.upload_url = '" + uploadUrl + "'");
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