reset SequenceAnalysisCustomizer to 21.3 version

Author: jctrotter

SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceAnalysisCustomizer.java

@@ -12,7 +12,6 @@
 import org.labkey.api.data.DisplayColumn;
 import org.labkey.api.data.DisplayColumnFactory;
 import org.labkey.api.data.JdbcType;
-import org.labkey.api.data.MutableColumnInfo;
 import org.labkey.api.data.RenderContext;
 import org.labkey.api.data.SQLFragment;
 import org.labkey.api.data.TableCustomizer;
@@ -100,21 +99,21 @@ private void customizeSharedCols(AbstractTableInfo ti)
     private enum COL_ENUM
     {
         refNtSequence(Integer.class, PageFlowUtil.set("sequenceid", "ref_nt_sequence")){
-            public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
+            public void customizeColumn(BaseColumnInfo col, AbstractTableInfo ti)
             {
                 col.setLabel("Ref NT Sequence");
                 addFk(ti.getUserSchema().getContainer(), ti.getUserSchema().getUser(), col, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_REF_NT_SEQUENCES, "rowid", "name");
             }
         },
         libraryId(Integer.class, PageFlowUtil.set("genomeId", "genome_id", "library_id")){
-            public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
+            public void customizeColumn(BaseColumnInfo col, AbstractTableInfo ti)
             {
                 col.setLabel("Reference Genome");
                 addFk(ti.getUserSchema().getContainer(), ti.getUserSchema().getUser(), col, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_REF_LIBRARIES, "rowid", "rowid");
             }
         },
         runid(Integer.class, PageFlowUtil.set("run_id")){
-            public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
+            public void customizeColumn(BaseColumnInfo col, AbstractTableInfo ti)
             {
                 col.setLabel("Run");
                 col.setShownInInsertView(false);
@@ -125,7 +124,7 @@ public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
             }
         },
         jobid(Integer.class, PageFlowUtil.set("job_id")){
-            public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
+            public void customizeColumn(BaseColumnInfo col, AbstractTableInfo ti)
             {
                 col.setLabel("Job Id");
                 col.setShownInInsertView(false);
@@ -135,21 +134,21 @@ public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
             }
         },
         dataId(Integer.class, PageFlowUtil.set("data_id")){
-            public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
+            public void customizeColumn(BaseColumnInfo col, AbstractTableInfo ti)
             {
                 col.setLabel("File Id");
                 addFk(ti.getUserSchema().getContainer(), ti.getUserSchema().getUser(), col, "exp", "data", "rowid", null);
             }
         },
         readset(Integer.class, PageFlowUtil.set("readsetId", "readset_id")){
-            public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
+            public void customizeColumn(BaseColumnInfo col, AbstractTableInfo ti)
             {
                 col.setLabel("Readset");
                 addFk(ti.getUserSchema().getContainer(), ti.getUserSchema().getUser(), col, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READSETS, "rowid", null);
             }
         },
         analysisId(Integer.class, PageFlowUtil.set("analysis_id")){
-            public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
+            public void customizeColumn(BaseColumnInfo col, AbstractTableInfo ti)
             {
                 col.setLabel("Analysis Id");
                 addFk(ti.getUserSchema().getContainer(), ti.getUserSchema().getUser(), col, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_ANALYSES, "rowid", null);
@@ -162,7 +161,7 @@ public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti)
         COL_ENUM(Class dataType, @Nullable Collection<String> alternateNames){
             this.dataType = dataType;
             if (alternateNames != null)
-            this.alternateNames.addAll(alternateNames);
+                this.alternateNames.addAll(alternateNames);
         }
 
         public Collection<String> getAlternateNames()
@@ -177,19 +176,19 @@ private static void setNonEditable(BaseColumnInfo col)
             col.setShownInUpdateView(false);
         }
 
-        private static void addFk(Container c, User u, MutableColumnInfo col, String schema, String query, String pkCol, @Nullable String displayCol)
+        private static void addFk(Container c, User u, BaseColumnInfo col, String schema, String query, String pkCol, @Nullable String displayCol)
         {
             if (col.getFk() == null)
             {
                 col.setFk(QueryForeignKey.from(DefaultSchema.get(u,c),null)
-                    .schema(schema, c)
-                    .to(query, pkCol, displayCol));
+                        .schema(schema, c)
+                        .to(query, pkCol, displayCol));
             }
         }
 
-        abstract public void customizeColumn(MutableColumnInfo col, AbstractTableInfo ti);
+        abstract public void customizeColumn(BaseColumnInfo col, AbstractTableInfo ti);
 
-        public static void processColumn(MutableColumnInfo col, AbstractTableInfo ti)
+        public static void processColumn(BaseColumnInfo col, AbstractTableInfo ti)
         {
             for (COL_ENUM colEnum : COL_ENUM.values())
             {
@@ -270,4 +269,4 @@ public void renderGridCellContents(RenderContext ctx, Writer out) throws IOExcep
             };
         }
     }
-}
+}