For docker

bbimber · bbimber · commit f9e70c2d3098 · 2024-12-04T04:35:34.000-08:00
diff --git a/SequenceAnalysis/api-src/org/labkey/api/sequenceanalysis/run/DockerWrapper.java b/SequenceAnalysis/api-src/org/labkey/api/sequenceanalysis/run/DockerWrapper.java
@@ -169,7 +169,7 @@ public void executeWithDocker(List<String> containerArgs, File workDir, Pipeline
 
         localBashScript.setExecutable(true);
         dockerBashScript.setExecutable(true);
-        execute(Arrays.asList("/bin/bash", localBashScript.getPath()));
+        execute(Arrays.asList(localBashScript.getPath()));
     }
 
     public void addToDockerEnvironment(String key, String value)

Original file line number	Diff line number	Diff line change
`@@ -169,7 +169,7 @@ public void executeWithDocker(List<String> containerArgs, File workDir, Pipeline`
`169`	`169`
`170`	`170`	`localBashScript.setExecutable(true);`
`171`	`171`	`dockerBashScript.setExecutable(true);`
`172`		`- execute(Arrays.asList("/bin/bash", localBashScript.getPath()));`
	`172`	`+ execute(Arrays.asList(localBashScript.getPath()));`
`173`	`173`	`}`
`174`	`174`
`175`	`175`	`public void addToDockerEnvironment(String key, String value)`