Fix paraGRAPH typo

bbimber · bbimber · commit f99aba9e5ffb · 2024-06-17T20:59:21.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/ParagraphStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/ParagraphStep.java
@@ -15,7 +15,6 @@
 import org.labkey.api.sequenceanalysis.run.SimpleScriptWrapper;
 import org.labkey.api.util.FileUtil;
 import org.labkey.sequenceanalysis.SequenceAnalysisModule;
-import org.labkey.sequenceanalysis.run.variant.DepthOfCoverageHandler;
 import org.labkey.sequenceanalysis.util.SequenceUtil;
 
 import java.io.File;
@@ -57,7 +56,7 @@ public boolean doRunLocal()
     @Override
     public SequenceOutputProcessor getProcessor()
     {
-        return new DepthOfCoverageHandler.Processor();
+        return new Processor();
     }
 
     public static class Processor implements SequenceOutputProcessor

Original file line number	Diff line number	Diff line change
`@@ -15,7 +15,6 @@`
`15`	`15`	`import org.labkey.api.sequenceanalysis.run.SimpleScriptWrapper;`
`16`	`16`	`import org.labkey.api.util.FileUtil;`
`17`	`17`	`import org.labkey.sequenceanalysis.SequenceAnalysisModule;`
`18`		`-import org.labkey.sequenceanalysis.run.variant.DepthOfCoverageHandler;`
`19`	`18`	`import org.labkey.sequenceanalysis.util.SequenceUtil;`
`20`	`19`
`21`	`20`	`import java.io.File;`
`@@ -57,7 +56,7 @@ public boolean doRunLocal()`
`57`	`56`	`@Override`
`58`	`57`	`public SequenceOutputProcessor getProcessor()`
`59`	`58`	`{`
`60`		`- return new DepthOfCoverageHandler.Processor();`
	`59`	`+ return new Processor();`
`61`	`60`	`}`
`62`	`61`
`63`	`62`	`public static class Processor implements SequenceOutputProcessor`