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Update module locations for laboratory and GenotypeAssays (#5)
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‎SequenceAnalysis/build.gradle‎

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@@ -17,7 +17,7 @@ repositories {
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dependencies {
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apiCompile "com.github.samtools:htsjdk:${htsjdkVersion}"
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external "com.github.samtools:htsjdk:${htsjdkVersion}"
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:DiscvrLabKeyModules:laboratory", depProjectConfig: "apiCompile")
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:LabDevKitModules:laboratory", depProjectConfig: "apiCompile")
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:LabDevKitModules:LDK", depProjectConfig: "apiCompile")
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external 'org.biojava:biojava3-core:3.0.7'
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external 'org.biojava:biojava3-genome:3.0.7'

‎blast/build.gradle‎

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@@ -2,7 +2,7 @@ import org.labkey.gradle.util.BuildUtils;
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dependencies
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{
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:DiscvrLabKeyModules:laboratory", depProjectConfig: "apiCompile")
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:LabDevKitModules:laboratory", depProjectConfig: "apiCompile")
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:LabDevKitModules:LDK", depProjectConfig: "apiCompile")
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:DiscvrLabKeyModules:SequenceAnalysis", depProjectConfig: "apiCompile")
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}

‎jbrowse/build.gradle‎

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@@ -10,7 +10,7 @@ repositories {
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dependencies {
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:LabDevKitModules:LDK", depProjectConfig: "apiCompile")
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:DiscvrLabKeyModules:SequenceAnalysis", depProjectConfig: "apiCompile")
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:DiscvrLabKeyModules:laboratory", depProjectConfig: "apiCompile")
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BuildUtils.addLabKeyDependency(project: project, config: "compile", depProjectPath: ":server:modules:LabDevKitModules:laboratory", depProjectConfig: "apiCompile")
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}
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project.task("copyJBrowse",

‎laboratory/api-src/org/labkey/api/laboratory/AbstractImportingNavItem.java‎

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‎laboratory/api-src/org/labkey/api/laboratory/AbstractQueryNavItem.java‎

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‎laboratory/api-src/org/labkey/api/laboratory/AbstractUrlNavItem.java‎

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‎laboratory/api-src/org/labkey/api/laboratory/DetailsUrlWithLabelNavItem.java‎

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‎laboratory/api-src/org/labkey/api/laboratory/DetailsUrlWithoutLabelNavItem.java‎

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