Improve logging

bbimber · bbimber · commit ef08c067f811 · 2024-04-01T06:54:59.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/ProcessVariantsHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/ProcessVariantsHandler.java
@@ -778,6 +778,7 @@ protected String getJsonName()
 
         public void setStepComplete(int stepIdx, String inputFilePath, RecordedAction action, File scatterOutput) throws PipelineJobException
         {
+            getLogger().debug("Marking step complete with VCF: " + inputFilePath);
             _scatterOutputs.put(getKey(stepIdx, inputFilePath), scatterOutput);
             _recordedActions.add(action);
             saveState();

Original file line number	Diff line number	Diff line change
`@@ -778,6 +778,7 @@ protected String getJsonName()`
`778`	`778`
`779`	`779`	`public void setStepComplete(int stepIdx, String inputFilePath, RecordedAction action, File scatterOutput) throws PipelineJobException`
`780`	`780`	`{`
	`781`	`+ getLogger().debug("Marking step complete with VCF: " + inputFilePath);`
`781`	`782`	`_scatterOutputs.put(getKey(stepIdx, inputFilePath), scatterOutput);`
`782`	`783`	`_recordedActions.add(action);`
`783`	`784`	`saveState();`