Add logging to pipeline job

bbimber · bbimber · commit ed7cde257a57 · 2022-01-31T09:11:47.000-08:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/RestoreSraDataHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/RestoreSraDataHandler.java
@@ -5,7 +5,6 @@
 import org.jetbrains.annotations.Nullable;
 import org.json.JSONObject;
 import org.labkey.api.data.Container;
-import org.labkey.api.data.Table;
 import org.labkey.api.data.TableInfo;
 import org.labkey.api.exp.api.ExpData;
 import org.labkey.api.exp.api.ExperimentService;
@@ -101,6 +100,7 @@ public void init(PipelineJob job, SequenceAnalysisJobSupport support, List<Reads
             }
 
             Readset rs = readsets.get(0);
+            job.getLogger().info("Restoring readset: " + rs.getName());
             int totalArchivedPairs = 0;
             for (ReadData rd : rs.getReadData())
             {

Original file line number	Diff line number	Diff line change
`@@ -5,7 +5,6 @@`
`5`	`5`	`import org.jetbrains.annotations.Nullable;`
`6`	`6`	`import org.json.JSONObject;`
`7`	`7`	`import org.labkey.api.data.Container;`
`8`		`-import org.labkey.api.data.Table;`
`9`	`8`	`import org.labkey.api.data.TableInfo;`
`10`	`9`	`import org.labkey.api.exp.api.ExpData;`
`11`	`10`	`import org.labkey.api.exp.api.ExperimentService;`
`@@ -101,6 +100,7 @@ public void init(PipelineJob job, SequenceAnalysisJobSupport support, List<Reads`
`101`	`100`	`}`
`102`	`101`
`103`	`102`	`Readset rs = readsets.get(0);`
	`103`	`+ job.getLogger().info("Restoring readset: " + rs.getName());`
`104`	`104`	`int totalArchivedPairs = 0;`
`105`	`105`	`for (ReadData rd : rs.getReadData())`
`106`	`106`	`{`