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Push RIRA logic into R package
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‎singlecell/resources/chunks/RunRiraClassification.R‎

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@@ -4,7 +4,6 @@ for (datasetId in names(seuratObjects)) {
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seuratObj <- RIRA::Classify_ImmuneCells(seuratObj, maxBatchSize = maxBatchSize, retainProbabilityMatrix = retainProbabilityMatrix)
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seuratObj <- RIRA::Classify_TNK(seuratObj, maxBatchSize = maxBatchSize, retainProbabilityMatrix = retainProbabilityMatrix)
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seuratObj$RIRA_TNK_v2.predicted_labels[seuratObj$RIRA_Immune_v2.majority_voting != 'T_NK'] <- 'Other'
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seuratObj <- RIRA::Classify_Myeloid(seuratObj, maxBatchSize = maxBatchSize, retainProbabilityMatrix = retainProbabilityMatrix)
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