Add another study

Author: bbimber

singlecell/resources/chunks/StudyMetadata.R

@@ -16,6 +16,8 @@ for (datasetId in names(seuratObjects)) {
         seuratObj <- Rdiscvr::ApplyTBMetadata(seuratObj, errorIfUnknownIdsFound = errorIfUnknownIdsFound)
     } else if (studyName == 'Malaria') {
         seuratObj <- Rdiscvr::ApplyMalariaMetadata(seuratObj, errorIfUnknownIdsFound = errorIfUnknownIdsFound)
+    } else if (studyName == 'PC531') {
+        seuratObj <- Rdiscvr::ApplyPC531Metadata(seuratObj, errorIfUnknownIdsFound = errorIfUnknownIdsFound)
     } else {
         stop(paste0('Unknown study: ', studyName))
     }

singlecell/src/org/labkey/singlecell/pipeline/singlecell/StudyMetadata.java

@@ -7,7 +7,6 @@
 import org.labkey.api.singlecell.pipeline.SingleCellStep;
 
 import java.util.Arrays;
-import java.util.List;
 
 public class StudyMetadata extends AbstractRDiscvrStep
 {
@@ -21,11 +20,11 @@ public static class Provider extends AbstractPipelineStepProvider<SingleCellStep
         public Provider()
         {
             super("StudyMetadata", "Append Study Metadata", "RDiscvr", "This uses Rdiscvr to append study-specific metadata.", Arrays.asList(
-                    SeuratToolParameter.create("testsToUse", "Tests To Use", "The set of tests to perform.", "ldk-simplecombo", new JSONObject()
+                    SeuratToolParameter.create("studyName", "Study Name", "The study metadata to apply.", "ldk-simplecombo", new JSONObject()
                     {{
                         put("multiSelect", false);
                         put("allowBlank", false);
-                        put("storeValues", "PC475;TB;Malaria");
+                        put("storeValues", "PC475;PC531;TB;Malaria");
                         put("delimiter", ";");
                     }}, null, null, false, false),
                     SeuratToolParameter.create("errorIfUnknownIdsFound", "Error If Unknown Ids Found", "If true, the job will fail if the seurat object contains ID not present in the metadata", "checkbox", null, true)