Bugfix related to jbrowse trackId

Author: bbimber

jbrowse/src/client/JBrowse/utils.ts

@@ -158,7 +158,7 @@ function applyUrlParams(json, queryParam) {
             } else {
                 let found = false
                 for (const track of json.tracks) {
-                    if (track.trackId?.toLowerCase() === trackId?.toLowerCase() || track.name?.toLowerCase() === trackId?.toLowerCase()) {
+                    if (track.trackId?.toLowerCase() === trackId?.toLowerCase() || track.name?.toLowerCase() === trackId?.toLowerCase() || track.trackId?.toLowerCase().includes(trackId?.toLowerCase())) {
                         track.displays[0].renderer.activeSamples = sampleList.join(',')
                         found = true
                         break
@@ -182,7 +182,7 @@ function applyUrlParams(json, queryParam) {
             const infoFilterList = JSON.parse(decodeURIComponent(infoFilterObj))
             let found = false
             for (const track of json.tracks) {
-                if (track.trackId?.toLowerCase() === trackId?.toLowerCase() || track.name?.toLowerCase() === trackId?.toLowerCase()) {
+                if (track.trackId?.toLowerCase() === trackId?.toLowerCase() || track.name?.toLowerCase() === trackId?.toLowerCase() || track.trackId?.toLowerCase().includes(trackId?.toLowerCase())) {
                     track.displays[0].renderer.infoFilters = [...infoFilterList]
                     found = true
                     break

jbrowse/src/org/labkey/jbrowse/model/JsonFile.java

@@ -503,7 +503,6 @@ private JSONObject getVcfTrack(Logger log, ExpData targetFile, ReferenceGenome r
         ret.put("type", getTrackType());
         final File finalLocation = getLocationOfProcessedTrack(false);
         ret.put("trackId", finalLocation == null ? null : finalLocation.getName());
-        ret.put("trackGUID", getObjectId());
         ret.put("name", getLabel());
         ret.put("assemblyNames", new JSONArray(){{
             put(JBrowseSession.getAssemblyName(rg));
@@ -571,7 +570,6 @@ private JSONObject getBamTrack(Logger log, ExpData targetFile, ReferenceGenome r
         ret.put("type", getTrackType());
         final File finalLocation = getLocationOfProcessedTrack(false);
         ret.put("trackId", finalLocation == null ? null : finalLocation.getName());
-        ret.put("trackGUID", getObjectId());
         ret.put("name", getLabel());
         ret.put("category", new JSONArray(){{
             put(getCategory());
@@ -657,7 +655,6 @@ private JSONObject getTabixTrack(Logger log, ExpData targetFile, ReferenceGenome
         ret.put("type", getTrackType());
         final File finalLocation = getLocationOfProcessedTrack(false);
         ret.put("trackId", finalLocation == null ? null : finalLocation.getName());
-        ret.put("trackGUID", getObjectId());
         ret.put("name", getLabel());
         ret.put("category", new JSONArray(){{
             put(getCategory());