Fix end with indels

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/PindelAnalysis.java

@@ -331,7 +331,7 @@ private static void parsePindelOutput(PipelineContext ctx, CSVWriter writer, Fil
 
                     String type = tokens[1].split(" ")[0];
                     int baseAfterEnd = Integer.parseInt(tokens[5]);
-                    int trueEnd = "I".equals(type) ? baseAfterEnd : baseAfterEnd - 1;
+                    int trueEnd = baseAfterEnd - 1;
 
                     // Capture depth before/after event:
                     int j = 0;