Merge pull request #410 from LabKey/fb_merge_25.11_to_develop

Merge discvr-25.11 to develop

Author: bbimber

SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.329-12.330.sql

@@ -17,23 +17,17 @@ CREATE NONCLUSTERED INDEX IDX_alignment_summary_analysis_id_rowid_container_tota
 	rowid ASC,
 	container ASC
 )
-INCLUDE(total)
+INCLUDE(total);
 
-CREATE STATISTICS STAT_ref_nt_sequence_rowid_locus_container ON sequenceanalysis.ref_nt_sequences (RowId, locus, container)
-WITH AUTO_DROP = OFF
+CREATE STATISTICS STAT_ref_nt_sequence_rowid_locus_container ON sequenceanalysis.ref_nt_sequences (RowId, locus, container);
 
-CREATE STATISTICS STAT_ref_nt_sequence_locus_container ON sequenceanalysis.ref_nt_sequences (locus, container)
-WITH AUTO_DROP = OFF
+CREATE STATISTICS STAT_ref_nt_sequence_locus_container ON sequenceanalysis.ref_nt_sequences (locus, container);
 
-CREATE STATISTICS STAT_sequence_analyses_container_readset ON sequenceanalysis.sequence_analyses (Container, readset)
-WITH AUTO_DROP = OFF
+CREATE STATISTICS STAT_sequence_analyses_container_readset ON sequenceanalysis.sequence_analyses (Container, readset);
 
-CREATE STATISTICS STAT_sequence_readsets_rowid_container ON sequenceanalysis.sequence_readsets (RowId, Container)
-WITH AUTO_DROP = OFF
+CREATE STATISTICS STAT_sequence_readsets_rowid_container ON sequenceanalysis.sequence_readsets (RowId, Container);
 
-CREATE STATISTICS STAT_asj_alignmentid_container_ref_nt_id ON sequenceanalysis.alignment_summary_junction (alignment_id, container, ref_nt_id)
-WITH AUTO_DROP = OFF
+CREATE STATISTICS STAT_asj_alignmentid_container_ref_nt_id ON sequenceanalysis.alignment_summary_junction (alignment_id, container, ref_nt_id);
 
-CREATE STATISTICS STAT_asj_alignmentid_ref_nt_id_status_alignment_id ON sequenceanalysis.alignment_summary_junction (ref_nt_id, status, alignment_id)
-WITH AUTO_DROP = OFF
+CREATE STATISTICS STAT_asj_alignmentid_ref_nt_id_status_alignment_id ON sequenceanalysis.alignment_summary_junction (ref_nt_id, status, alignment_id);
 

singlecell/src/org/labkey/singlecell/run/CellRangerGexCountStep.java

@@ -626,7 +626,8 @@ public enum Chemistry
         // cellranger-x.y.z/lib/python/cellranger/barcodes/
         FivePE_V3("Single Cell 5' PE v3", "3M-5pgex-jan-2023.txt.gz"),
         FivePE_V2("Single Cell 5' PE v2", "737k-august-2016.txt"),
-        FivePE_V1("Single Cell 5' PE", "737K-april-2014_rc.txt");
+        FivePE_V1("Single Cell 5' PE", "737k-august-2016.txt");
+        // Single Cell 3' v1: 737K-april-2014_rc.txt
 
         final String _label;
         final String _inclusionListFile;