Escape plus sign in 10x sample names

bbimber · bbimber · commit e43c85fca7f8 · 2022-01-10T12:24:15.000-08:00
diff --git a/singlecell/src/org/labkey/singlecell/run/CellRangerWrapper.java b/singlecell/src/org/labkey/singlecell/run/CellRangerWrapper.java
@@ -167,7 +167,7 @@ private void createSymLink(File input, File target) throws IOException
 
     public String makeLegalSampleName(String sampleName)
     {
-        return FileUtil.makeLegalName(sampleName.replaceAll("_", "-")).replaceAll(" ", "-").replaceAll("\\.", "-");
+        return FileUtil.makeLegalName(sampleName.replaceAll("_", "-")).replaceAll(" ", "-").replaceAll("\\.", "-").replaceAll("\\+", "");
     }
 
     private String getSymlinkFileName(String fileName, boolean doRename, String sampleName, int idx, boolean isReversed)

Original file line number	Diff line number	Diff line change
`@@ -167,7 +167,7 @@ private void createSymLink(File input, File target) throws IOException`
`167`	`167`
`168`	`168`	`public String makeLegalSampleName(String sampleName)`
`169`	`169`	`{`
`170`		`- return FileUtil.makeLegalName(sampleName.replaceAll("_", "-")).replaceAll(" ", "-").replaceAll("\\.", "-");`
	`170`	`+ return FileUtil.makeLegalName(sampleName.replaceAll("_", "-")).replaceAll(" ", "-").replaceAll("\\.", "-").replaceAll("\\+", "");`
`171`	`171`	`}`
`172`	`172`
`173`	`173`	`private String getSymlinkFileName(String fileName, boolean doRename, String sampleName, int idx, boolean isReversed)`