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Correct argument
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singlecell/src/org/labkey/singlecell/run/NimbleHelper.java

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -501,7 +501,7 @@ public static void write10xBarcodes(File bam, Logger log, Readset rs, ReferenceG
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// Write barcodes:
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DISCVRSeqRunner runner = new DISCVRSeqRunner(log);
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List<String> barcodeArgs = new ArrayList<>(runner.getBaseArgs("Save10xBarcodes"));
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barcodeArgs.add("--bam");
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barcodeArgs.add("-I");
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barcodeArgs.add(bam.getPath());
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File cbOutput = new File(bam.getParentFile(), SequenceAnalysisService.get().getUnzippedBaseName(bam.getName()) + "cb.txt.gz");

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