More informative error

bbimber · bbimber · commit de8a6ec0dc80 · 2021-12-14T09:11:09.000-08:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VariantFiltrationStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VariantFiltrationStep.java
@@ -114,7 +114,7 @@ public Output processVariants(File inputVCF, File outputDirectory, ReferenceGeno
             File maskData = getPipelineCtx().getSequenceSupport().getCachedData(mask.getInt("fileId"));
             if (maskData == null || !maskData.exists())
             {
-                throw new PipelineJobException("file not found for dataId: " + mask.opt("fileId"));
+                throw new PipelineJobException("file not found for dataId: " + mask.opt("fileId") + (maskData == null ? ". file was null" : ". path: " + maskData.getPath()));
             }
 
             SequenceAnalysisService.get().ensureFeatureFileIndex(maskData, getPipelineCtx().getLogger());

Original file line number	Diff line number	Diff line change
`@@ -114,7 +114,7 @@ public Output processVariants(File inputVCF, File outputDirectory, ReferenceGeno`
`114`	`114`	`File maskData = getPipelineCtx().getSequenceSupport().getCachedData(mask.getInt("fileId"));`
`115`	`115`	`if (maskData == null \|\| !maskData.exists())`
`116`	`116`	`{`
`117`		`- throw new PipelineJobException("file not found for dataId: " + mask.opt("fileId"));`
	`117`	`+ throw new PipelineJobException("file not found for dataId: " + mask.opt("fileId") + (maskData == null ? ". file was null" : ". path: " + maskData.getPath()));`
`118`	`118`	`}`
`119`	`119`
`120`	`120`	`SequenceAnalysisService.get().ensureFeatureFileIndex(maskData, getPipelineCtx().getLogger());`