Look for metrics file in correct location

bbimber · bbimber · commit dd1fb73d57f0 · 2021-02-11T13:02:25.000-08:00
diff --git a/singlecell/src/org/labkey/singlecell/run/CellRangerFeatureBarcodeHandler.java b/singlecell/src/org/labkey/singlecell/run/CellRangerFeatureBarcodeHandler.java
@@ -406,7 +406,7 @@ public void complete(PipelineJob job, List<Readset> readsets, List<SequenceOutpu
 
             Readset rs = readsets.get(0);
 
-            File metrics = new File(so.getFile().getParentFile(), "metrics_summary.csv");
+            File metrics = new File(so.getFile().getParentFile().getParentFile(), "metrics_summary.csv");
             if (metrics.exists())
             {
                 job.getLogger().debug("adding 10x metrics");

Original file line number	Diff line number	Diff line change
`@@ -406,7 +406,7 @@ public void complete(PipelineJob job, List<Readset> readsets, List<SequenceOutpu`
`406`	`406`
`407`	`407`	`Readset rs = readsets.get(0);`
`408`	`408`
`409`		`- File metrics = new File(so.getFile().getParentFile(), "metrics_summary.csv");`
	`409`	`+ File metrics = new File(so.getFile().getParentFile().getParentFile(), "metrics_summary.csv");`
`410`	`410`	`if (metrics.exists())`
`411`	`411`	`{`
`412`	`412`	`job.getLogger().debug("adding 10x metrics");`