Add pct to NT import

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/LofreqAnalysis.java

@@ -966,6 +966,7 @@ private void importNtSnps(AnalysisModel model, File inputBam, File outDir) throw
                 ntRow.put("readcount", alleleDepth);
                 ntRow.put("depth", depth);
                 ntRow.put("adj_depth", vc.getAttribute("DP"));
+                ntRow.put("pct", vc.getAttribute("AF"));
                 ntRow.put("container", getPipelineCtx().getJob().getContainer().getEntityId());
                 ntRow.put("createdby", getPipelineCtx().getJob().getUser().getUserId());
                 ntRow.put("modifiedby", getPipelineCtx().getJob().getUser().getUserId());