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Simplify JBrowse diamond
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2 files changed

+1
-28
lines changed
  • SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis
  • jbrowse/src/client/JBrowse/Browser/plugins/ExtendedVariantPlugin/ExtendedVariantRenderer/components

2 files changed

+1
-28
lines changed

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/ImmunoGenotypingAnalysis.java

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@@ -54,7 +54,7 @@
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*/
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public class ImmunoGenotypingAnalysis extends AbstractCommandPipelineStep<ImmunoGenotypingWrapper> implements AnalysisStep
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{
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public ImmunoGenotypingAnalysis(PipelineStepProvider provider, PipelineContext ctx)
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public ImmunoGenotypingAnalysis(PipelineStepProvider<?> provider, PipelineContext ctx)
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{
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super(provider, ctx, new ImmunoGenotypingWrapper(ctx.getLogger()));
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}

jbrowse/src/client/JBrowse/Browser/plugins/ExtendedVariantPlugin/ExtendedVariantRenderer/components/Diamond.tsx

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@@ -1,8 +1,6 @@
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import { readConfObject } from '@jbrowse/core/configuration';
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import { PropTypes as CommonPropTypes } from '@jbrowse/core/util/types/mst';
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import { emphasize } from '@jbrowse/core/util/color';
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import { observer } from 'mobx-react';
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import ReactPropTypes from 'prop-types';
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import React from 'react';
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import { Feature } from '@jbrowse/core/util/simpleFeature';
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@@ -68,29 +66,4 @@ function Diamond(props) {
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)
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}
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Diamond.propTypes = {
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feature: ReactPropTypes.shape({
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id: ReactPropTypes.func.isRequired,
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get: ReactPropTypes.func.isRequired,
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}).isRequired,
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region: CommonPropTypes.Region.isRequired,
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bpPerPx: ReactPropTypes.number.isRequired,
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featureLayout: ReactPropTypes.shape({
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absolute: ReactPropTypes.shape({
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top: ReactPropTypes.number.isRequired,
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left: ReactPropTypes.number.isRequired,
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width: ReactPropTypes.number.isRequired,
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height: ReactPropTypes.number.isRequired,
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}),
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}).isRequired,
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selected: ReactPropTypes.bool,
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config: CommonPropTypes.ConfigSchema.isRequired,
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reversed: ReactPropTypes.bool,
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}
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Diamond.defaultProps = {
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selected: false,
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reversed: false,
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}
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export default observer(Diamond)

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