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Commit d409f7b

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Fix typo
1 parent ab52131 commit d409f7b

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4 files changed

+6
-6
lines changed

4 files changed

+6
-6
lines changed

singlecell/src/org/labkey/singlecell/analysis/AbstractSingleCellHandler.java

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -362,7 +362,7 @@ else if (step.createsSeuratObjects())
362362
File finalHtml = new File(ctx.getOutputDir(), "finalHtml.html");
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List<String> lines = new ArrayList<>();
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lines.add("rmarkdown::render(output_file = '" + finalHtml.getName() + "', input = '" + finalMarkdownFile.getName() + "', intermediates_dir = '/work')");
365-
AbstractSingleCellPipelineStep.executeR(ctx, AbstractCellMembraneStep.CONTINAER_NAME, "pandoc", lines);
365+
AbstractSingleCellPipelineStep.executeR(ctx, AbstractCellMembraneStep.CONTAINER_NAME, "pandoc", lines);
366366
_resumer.getFileManager().addIntermediateFile(finalMarkdownFile);
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_resumer.getFileManager().addIntermediateFiles(_resumer.getMarkdownsInOrder());
368368
_resumer.getFileManager().addIntermediateFiles(_resumer.getHtmlFilesInOrder());

singlecell/src/org/labkey/singlecell/pipeline/singlecell/AbstractCellMembraneStep.java

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -9,7 +9,7 @@
99

1010
abstract public class AbstractCellMembraneStep extends AbstractSingleCellPipelineStep
1111
{
12-
public static String CONTINAER_NAME = "ghcr.io/bimberlabinternal/cellmembrane:latest";
12+
public static String CONTAINER_NAME = "ghcr.io/bimberlabinternal/cellmembrane:latest";
1313

1414
public AbstractCellMembraneStep(PipelineStepProvider provider, PipelineContext ctx)
1515
{
@@ -25,6 +25,6 @@ public Collection<String> getRLibraries()
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@Override
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public String getDockerContainerName()
2727
{
28-
return CONTINAER_NAME;
28+
return CONTAINER_NAME;
2929
}
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}

singlecell/src/org/labkey/singlecell/pipeline/singlecell/AbstractRDiscvrStep.java

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -9,7 +9,7 @@
99

1010
abstract public class AbstractRDiscvrStep extends AbstractSingleCellPipelineStep
1111
{
12-
public static String CONTINAER_NAME = "ghcr.io/bimberlabinternal/rdiscvr:latest";
12+
public static String CONTAINER_NAME = "ghcr.io/bimberlabinternal/rdiscvr:latest";
1313

1414
public AbstractRDiscvrStep(PipelineStepProvider provider, PipelineContext ctx)
1515
{
@@ -25,6 +25,6 @@ public Collection<String> getRLibraries()
2525
@Override
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public String getDockerContainerName()
2727
{
28-
return CONTINAER_NAME;
28+
return CONTAINER_NAME;
2929
}
3030
}

singlecell/src/org/labkey/singlecell/pipeline/singlecell/AppendCiteSeq.java

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -78,7 +78,7 @@ public Collection<String> getRLibraries()
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@Override
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public String getDockerContainerName()
8080
{
81-
return AbstractCellMembraneStep.CONTINAER_NAME;
81+
return AbstractCellMembraneStep.CONTAINER_NAME;
8282
}
8383

8484
@Override

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