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Bugfix to readset import when one pair is archived to SRA
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SequenceAnalysis/src/org/labkey/sequenceanalysis/ReadDataImpl.java

Lines changed: 5 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -284,13 +284,16 @@ private File getFile(int fileIdx, Integer fileId, boolean allowArchived)
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ret = d.getFile();
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}
286286

287-
if (ret != null && !ret.exists())
287+
if (!isArchived() && ret != null && !ret.exists())
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{
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throw new IllegalArgumentException("File does not exist: " + ret.getPath());
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}
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}
292292

293-
_cachedFiles.put(fileIdx, ret);
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if (!isArchived())
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{
295+
_cachedFiles.put(fileIdx, ret);
296+
}
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return ret;
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}

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